Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F24
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             201   3e-52
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                      96   3e-20
SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   7.6  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  201 bits (491), Expect = 3e-52
 Identities = 102/164 (62%), Positives = 124/164 (75%), Gaps = 1/164 (0%)
 Frame = +3

Query: 162 LIAPSQPKFKSVTQ*CLSKQNMASN-GKLALLSVSDKTGLLSLAKSLSECGLQLIASGGT 338
           + AP + +    T   L K+  A   G LALLSVS+K GL+  AK L + G +L+ASGGT
Sbjct: 7   IFAPIRMQVSKNTAHVLKKKMAAVGAGSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGT 66

Query: 339 ATALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILXRLSDSDQEDMKRQKYEMIS 518
           A A+RNAG+ V+DVS+IT APEMLGGRVKTLHPAVH GIL R+S+ D+ DM +Q +E I 
Sbjct: 67  ANAIRNAGIPVRDVSEITGAPEMLGGRVKTLHPAVHGGILARVSEGDKADMAKQGFEYIR 126

Query: 519 VVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRAAAKNHDR 650
           VVVCNLYPFV TV+K  V V++AVE IDIGGVTLLRAAAKNH+R
Sbjct: 127 VVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRAAAKNHER 170


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 45/66 (68%), Positives = 54/66 (81%)
 Frame = +3

Query: 453 ILXRLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRAA 632
           IL R+S+ D+ DM +Q +E I VVVCNLYPFV TV+K  V V++AVE IDIGGVTLLRAA
Sbjct: 2   ILARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRAA 61

Query: 633 AKNHDR 650
           AKNH+R
Sbjct: 62  AKNHER 67


>SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1194

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 387 CPTHLEL*GRRSEAPWRYRHWQSTAGHIPTGSLLTRVDPSCLK 259
           CP  + +   R+ +   Y  W+       TG+L+TR++PS +K
Sbjct: 447 CPNDITITTARNNSKAAYVTWKPPQAVDNTGNLVTRIEPSEIK 489


>SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 471 DSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVT 617
           +SD+ED + + YE+I          ++ +   D+     ++ I IGG T
Sbjct: 5   ESDKEDSQEEPYEIIETPGARQQDLLRDLMSMDLGNRTTIQQIGIGGAT 53


>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 645

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 233 KWKTSSSQRFRQDGSTLVSKEP 298
           +W T  ++R+R+DGS ++  EP
Sbjct: 334 QWHTVVAERYRRDGSLILDSEP 355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,284,277
Number of Sequences: 59808
Number of extensions: 367701
Number of successful extensions: 987
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)