Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F23
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   1.4  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    25   2.5  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    25   2.5  
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   4.4  

>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 236 TLNQNKDVKTKQSFTCLKSFILFI 165
           TL    + KT +SFT LK FIL I
Sbjct: 546 TLTAKSEAKTIRSFTKLKLFILLI 569


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 190 QVKDCFVFTSLFWLSVITAVI 252
           +V    VFTSLFW + IT+ I
Sbjct: 199 KVSAFLVFTSLFWFTGITSTI 219


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 254 FITAVMTLNQNKDVKTKQSFTCLKSFI 174
           ++ A+   + N     KQSFT LKSF+
Sbjct: 238 YMNAINNFSSNVQEGAKQSFTQLKSFL 264


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 267 LLFIFYYSSDDTQPKQRCENKAILYLLEKFYTIHMKTNI 151
           +LF++ YSS    P   CE+  +L L++  ++   K  I
Sbjct: 210 ILFVYDYSS--LNPTYHCESNVVLKLIDLAHSRWTKNTI 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 941,222
Number of Sequences: 5004
Number of extensions: 13945
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)