Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F23
         (344 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0164 - 1234885-1234965,1235299-1235417,1235504-1235742,123...    27   3.9  
11_01_0165 - 1349319-1349399,1349523-1349609,1349691-1349809,134...    27   3.9  
11_01_0144 + 1187532-1187813,1188913-1189454,1189621-1189707,119...    27   3.9  
01_06_0828 - 32263312-32263386,32263477-32263563,32263659-322637...    27   5.2  
09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972...    26   9.1  

>12_01_0164 -
           1234885-1234965,1235299-1235417,1235504-1235742,
           1235843-1235899,1236057-1236143,1236311-1236471
          Length = 247

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 42  SNSFTLSDHMVKFNLSLXLKLCIILWYFXII 134
           S++FT    ++K +LS  + LC+ LWY  I+
Sbjct: 33  SSAFTDLGAIMKLSLSSGVMLCLELWYNTIL 63


>11_01_0165 -
           1349319-1349399,1349523-1349609,1349691-1349809,
           1349899-1350137,1350240-1350296,1350593-1350679,
           1350822-1350955,1350971-1351357
          Length = 396

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 48  SFTLSDHMVKFNLSLXLKLCIILWYFXII 134
           +FT    +VK +LS  + LC+ LWY  I+
Sbjct: 155 AFTELGAIVKLSLSSGVMLCVELWYNTIL 183


>11_01_0144 +
           1187532-1187813,1188913-1189454,1189621-1189707,
           1190151-1190260,1190346-1190464,1190548-1190634,
           1191554-1191853
          Length = 508

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 42  SNSFTLSDHMVKFNLSLXLKLCIILWYFXII 134
           S++FT    ++K +LS  + LC+ LWY  I+
Sbjct: 254 SSAFTDLGAIMKLSLSSGVMLCLELWYNTIL 284


>01_06_0828 -
           32263312-32263386,32263477-32263563,32263659-32263777,
           32263886-32264124,32264219-32264275,32264370-32264456,
           32264545-32265086,32265157-32265405
          Length = 484

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 48  SFTLSDHMVKFNLSLXLKLCIILWYFXII 134
           +FT     VK +LS  + LC+ +WY+  +
Sbjct: 245 AFTSLGGFVKLSLSSAVMLCLEMWYYTAV 273


>09_02_0475 +
           9724676-9724936,9725518-9726216,9726273-9726596,
           9726900-9727847
          Length = 743

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 12  LWKXIPNYSLSNSFTLSDHMVKFNLSLXLKLCII 113
           LW+ +  +SL      S   + +++SL LK C +
Sbjct: 335 LWELVERHSLEREVFSSFKQIYYDMSLMLKSCFL 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,050,657
Number of Sequences: 37544
Number of extensions: 62894
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)