Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F21
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    85   4e-17
Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical p...    27   7.6  
Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical p...    27   7.6  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 40/63 (63%), Positives = 46/63 (73%)
 Frame = +2

Query: 263 LLGGKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRXIQYNRRFVNVVQTFGRRRGPN 442
           LLGGKVHGSLARAGKV+ QTPKV+         GRA R +QY RR+VNV    G++RGPN
Sbjct: 68  LLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVNVASGPGKKRGPN 127

Query: 443 SNS 451
           SNS
Sbjct: 128 SNS 130


>Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical
           protein C41C4.5b protein.
          Length = 887

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 361 WPC*AXNSVQQKICQRCAD 417
           WPC   +S ++K+C  C D
Sbjct: 269 WPCFPYSSWKEKLCSECVD 287


>Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical
           protein C41C4.5a protein.
          Length = 849

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 361 WPC*AXNSVQQKICQRCAD 417
           WPC   +S ++K+C  C D
Sbjct: 231 WPCFPYSSWKEKLCSECVD 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,279,274
Number of Sequences: 27780
Number of extensions: 179128
Number of successful extensions: 386
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)