Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_F19
(339 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 87 7e-19
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 54 8e-09
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 44 6e-06
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 44 6e-06
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc... 42 3e-05
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 41 6e-05
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 31 0.048
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 31 0.064
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 29 0.19
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 29 0.26
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 28 0.45
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 0.78
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 25 4.2
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 4.2
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po... 25 4.2
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 24 7.3
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce... 24 7.3
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 24 7.3
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 23 9.6
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 23 9.6
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 23 9.6
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 23 9.6
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 23 9.6
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 87.0 bits (206), Expect = 7e-19
Identities = 37/69 (53%), Positives = 55/69 (79%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMV 312
MSKA P+LKK++D+++ ++LN R V GVLRG+D F+N+VL++S+EE DG++ +G V
Sbjct: 1 MSKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSV 60
Query: 313 VIRGNSIIM 339
IRGNS+IM
Sbjct: 61 AIRGNSVIM 69
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 53.6 bits (123), Expect = 8e-09
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 7/69 (10%)
Frame = +1
Query: 154 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD-------GQRXNVGMV 312
+L ++ D+++ GR +TG+L+GFD MNLVLD+ E+ ++ G +G+V
Sbjct: 27 DLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLV 86
Query: 313 VIRGNSIIM 339
V+RG ++++
Sbjct: 87 VVRGTTLVL 95
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 44.0 bits (99), Expect = 6e-06
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC----KDGQRXNVGMVVIRG 324
L FM++++ + N GR V G L+GFD NL+L +S E +D + +G+ ++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 325 NSIIM 339
++ M
Sbjct: 63 ENVAM 67
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 44.0 bits (99), Expect = 6e-06
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNV-GMVVIRGNSI 333
L K + KK+ I+L++G G+L D +MNL L E EE +G++ NV G IRGN++
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLAL-ERTEEYVNGKKTNVYGDAFIRGNNV 67
Query: 334 I 336
+
Sbjct: 68 L 68
>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 140
Score = 41.9 bits (94), Expect = 3e-05
Identities = 19/64 (29%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC-KDGQRXNV--GMVVIRGN 327
L ++D+K+ + L G+ + G+LR FD F NL+L ++E D ++ G+ ++RG
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGE 75
Query: 328 SIIM 339
++++
Sbjct: 76 NVVL 79
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 40.7 bits (91), Expect = 6e-05
Identities = 15/41 (36%), Positives = 29/41 (70%)
Frame = +1
Query: 217 GVLRGFDPFMNLVLDESVEECKDGQRXNVGMVVIRGNSIIM 339
G +RGFD FMN+VLD++V+ + +G ++++G++I +
Sbjct: 40 GQIRGFDEFMNIVLDDAVQVDAKNNKRELGRILLKGDNITL 80
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 31.1 bits (67), Expect = 0.048
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 175 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-XNVGMVVIRGNSI 333
+ + ++L G G L D +MNL L E + DG + + IRGN+I
Sbjct: 13 RPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNI 66
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 30.7 bits (66), Expect = 0.064
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 154 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 273
++ ++ L++ GR G L FD FMNLVL + E
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQE 44
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 29.1 bits (62), Expect = 0.19
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE-ECKDGQRXNVGMVVIRGNSI 333
+ K + L + + + R G L GFD ++N+VL + E + G +++ GN +
Sbjct: 11 IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGM 70
Query: 334 IM 339
M
Sbjct: 71 CM 72
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 28.7 bits (61), Expect = 0.26
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 142 AHPPELKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 273
A P +L + +D+ + +KL R + G L +D +N+VL ++ E
Sbjct: 8 AEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEE 52
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 27.9 bits (59), Expect = 0.45
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 160 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD--ESVEECKDGQRXNVGMVVIRGNSI 333
K +D +++++L ++ G+L+ D F+N+ L+ V+ K V + IRG+ +
Sbjct: 8 KTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVV 67
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 0.78
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 254 TKFMNGSKPRNTPVTARPAFSFIDNFLSMNF 162
T+ GSKP NT V A S ++ ++MNF
Sbjct: 919 TQLNTGSKPVNTNVEALTTISSMNQAVNMNF 949
>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 256
Score = 24.6 bits (51), Expect = 4.2
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 151 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE 276
PEL K +D + + G G + F+PFM L L ESV++
Sbjct: 195 PELTKLVDFCKNHESTTGHFTIGDEKKFNPFMCLGL-ESVQK 235
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 24.6 bits (51), Expect = 4.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 180 FFVHEFFQFWWMCF*HCNVLFKIL 109
FF+ F F +C C VLF IL
Sbjct: 88 FFIRYLFTFGALCILGCLVLFPIL 111
>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 24.6 bits (51), Expect = 4.2
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = +2
Query: 98 IPYYNILKSTLQCQKHIH 151
+P YN ++ +C+ H+H
Sbjct: 4 LPIYNFIRKLPKCEHHVH 21
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 23.8 bits (49), Expect = 7.3
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = -2
Query: 242 NGSKPRNTPVTARPAFSFIDNFLSMNFF---NSGGCAFDIVMCFLKYYNTE 99
N +P+ P + S D + N + CA I+ C KY+NTE
Sbjct: 260 NSGRPQKPPQIDPHSSSLADEYRESNKRLQESKESCARFILDCDRKYFNTE 310
>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 23.8 bits (49), Expect = 7.3
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 107 YNILKSTLQCQKHIHQN*KNSWTK 178
YN++K + +KH+ +N K+ +K
Sbjct: 89 YNLIKKAVSVRKHLERNRKDKDSK 112
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 23.8 bits (49), Expect = 7.3
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +2
Query: 11 NIVEKLNSFDKIRWVGNSSNI 73
+++EK+ +K RWVGN++ +
Sbjct: 36 DLIEKVGD-EKFRWVGNTNEL 55
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 23.4 bits (48), Expect = 9.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 118 KKHITMSKAHPPELKKFMD 174
K H+ K +PPEL+ ++D
Sbjct: 378 KDHLDEYKTYPPELQWYLD 396
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 23.4 bits (48), Expect = 9.6
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -2
Query: 251 KFMNGSKPRNTPVTARPAFSFIDNFLSMNFFNSGG--CAFDIVMCF 120
+F+NG K + +IDN L+ N + +G A D MCF
Sbjct: 130 QFVNGIKSKYLSKETFLNLDYIDNHLASNEYFAGEQFTAADPQMCF 175
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 23.4 bits (48), Expect = 9.6
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -2
Query: 275 SSTDSSRTKFMNGSKPRNTPVTARPA 198
+S + F++ +P N P A+PA
Sbjct: 161 ASVQQQQATFVSNGQPHNLPAQAQPA 186
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 120 KAHYNVKSTSTRIEKIHGQKIVNKAE 197
+A + K+ TR+EKIH + V K++
Sbjct: 777 EAKFKNKNPMTRVEKIHLEVAVPKSQ 802
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTG 219
+KK +DK+L + N R V G
Sbjct: 77 IKKILDKRLPMSSNMARTVKG 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,452,929
Number of Sequences: 5004
Number of extensions: 27484
Number of successful extensions: 100
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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