Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_F19
(339 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94) 29 0.73
SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18) 28 2.2
SB_18527| Best HMM Match : LSM (HMM E-Value=1.3) 27 2.9
SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_51001| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_42059| Best HMM Match : RVT_1 (HMM E-Value=0.0011) 26 9.0
SB_38681| Best HMM Match : RVT_1 (HMM E-Value=0.0082) 26 9.0
SB_6749| Best HMM Match : RVT_1 (HMM E-Value=0.069) 26 9.0
SB_55514| Best HMM Match : RVT_1 (HMM E-Value=0.014) 26 9.0
SB_34669| Best HMM Match : DUF572 (HMM E-Value=1.6e-39) 26 9.0
SB_33858| Best HMM Match : RVT_1 (HMM E-Value=3.7e-21) 26 9.0
SB_16275| Best HMM Match : RVT_1 (HMM E-Value=1.7e-16) 26 9.0
>SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94)
Length = 327
Score = 29.5 bits (63), Expect = 0.73
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 223 THR*QRDPHSALLTIFCP*IFSILVDVLLTL 131
+H+ Q DPH+A L++ C ++S D L+ +
Sbjct: 139 SHKAQEDPHNAFLSLLCHVVYSAEPDWLMNI 169
>SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)
Length = 427
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRG 231
+S A P ++K +DK + IKLN G T L G
Sbjct: 249 VSHAEPADIKAALDKLVVIKLNGGLGTTMGLVG 281
>SB_18527| Best HMM Match : LSM (HMM E-Value=1.3)
Length = 198
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 229 GFDPFMNLVLDESVE 273
GFD +MNLVLDE+ E
Sbjct: 124 GFDEYMNLVLDEAEE 138
>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 26.2 bits (55), Expect = 6.8
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 230 PRNTPVTARPAFSFIDNF-LSMNFFNSGGCAFDIVMCFLKYYNTEL 96
PRN+P + I+++ L+ N S ++ MCFL Y +TEL
Sbjct: 498 PRNSPSYLPFVANDINSYALARNMRLSAKKCKEMAMCFLTYNSTEL 543
>SB_51001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 843
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 230 PRNTPVTARPAFSFIDNF-LSMNF-FNSGGCAFDIVMCFLKYYNTEL 96
PRN+P + I+++ L+ N N+ C ++ MCFL Y +TEL
Sbjct: 762 PRNSPSYLPFVANDINSYALARNMRLNAKKCK-EMAMCFLTYNSTEL 807
>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2346
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 230 PRNTPVTARPAFSFIDNF-LSMNF-FNSGGCAFDIVMCFLKYYNTEL 96
PRN+P + I+++ L+ N N+ C ++ MCFL Y +TEL
Sbjct: 931 PRNSPSYLPFVANDINSYALARNMRLNAKKCK-EMAMCFLTYNSTEL 976
>SB_42059| Best HMM Match : RVT_1 (HMM E-Value=0.0011)
Length = 272
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 230 PRNTPVTARPAFSFIDNF-LSMNF-FNSGGCAFDIVMCFLKYYNTEL 96
PRN+P + I+++ L+ N N+ C ++ MCFL Y +TEL
Sbjct: 141 PRNSPSYLPFVANDINSYALARNMRLNAKKCK-EMAMCFLTYNSTEL 186
>SB_38681| Best HMM Match : RVT_1 (HMM E-Value=0.0082)
Length = 559
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 230 PRNTPVTARPAFSFIDNF-LSMNF-FNSGGCAFDIVMCFLKYYNTEL 96
PRN+P + I+++ L+ N N+ C ++ MCFL Y +TEL
Sbjct: 329 PRNSPSYLPFVANDINSYALARNMRLNAKKCK-EMAMCFLTYNSTEL 374
>SB_6749| Best HMM Match : RVT_1 (HMM E-Value=0.069)
Length = 387
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 230 PRNTPVTARPAFSFIDNF-LSMNF-FNSGGCAFDIVMCFLKYYNTEL 96
PRN+P + I+++ L+ N N+ C ++ MCFL Y +TEL
Sbjct: 231 PRNSPSYLPFVANDINSYALARNMRLNAKKCK-EMAMCFLTYNSTEL 276
>SB_55514| Best HMM Match : RVT_1 (HMM E-Value=0.014)
Length = 684
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 230 PRNTPVTARPAFSFIDNF-LSMNF-FNSGGCAFDIVMCFLKYYNTEL 96
PRN+P + I+++ L+ N N+ C ++ MCFL Y +TEL
Sbjct: 194 PRNSPSYLPFVANDINSYALARNMRLNAKKCK-EMAMCFLTYNSTEL 239
>SB_34669| Best HMM Match : DUF572 (HMM E-Value=1.6e-39)
Length = 593
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 230 PRNTPVTARPAFSFIDNF-LSMNF-FNSGGCAFDIVMCFLKYYNTEL 96
PRN+P + I+++ L+ N N+ C ++ MCFL Y +TEL
Sbjct: 23 PRNSPSYLPFVANDINSYALARNMRLNAKKCK-EMAMCFLTYNSTEL 68
>SB_33858| Best HMM Match : RVT_1 (HMM E-Value=3.7e-21)
Length = 692
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 230 PRNTPVTARPAFSFIDNF-LSMNF-FNSGGCAFDIVMCFLKYYNTEL 96
PRN+P + I+++ L+ N N+ C ++ MCFL Y +TEL
Sbjct: 462 PRNSPSYLPFVANDINSYALARNMRLNAKKCK-EMAMCFLTYNSTEL 507
>SB_16275| Best HMM Match : RVT_1 (HMM E-Value=1.7e-16)
Length = 409
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 230 PRNTPVTARPAFSFIDNF-LSMNF-FNSGGCAFDIVMCFLKYYNTEL 96
PRN+P + I+++ L+ N N+ C ++ MCFL Y +TEL
Sbjct: 204 PRNSPSYLPFVANDINSYALARNMRLNAKKCK-EMAMCFLTYNSTEL 249
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,330,658
Number of Sequences: 59808
Number of extensions: 184234
Number of successful extensions: 459
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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