Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_F19
(339 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 119 3e-27
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 119 3e-27
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 119 3e-27
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 119 3e-27
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 119 3e-27
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 119 3e-27
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 119 3e-27
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 119 3e-27
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 119 3e-27
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 93 2e-19
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 58 9e-09
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 58 9e-09
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 58 9e-09
BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small ... 43 2e-04
AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein. 43 2e-04
AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein. 43 2e-04
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 43 3e-04
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 43 3e-04
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 43 3e-04
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 43 3e-04
AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein. 43 3e-04
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 42 5e-04
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 42 5e-04
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 42 5e-04
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 42 5e-04
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 42 5e-04
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 38 0.008
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 38 0.008
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 38 0.008
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 37 0.014
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 37 0.014
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 37 0.014
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 37 0.014
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 37 0.014
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 37 0.014
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 37 0.014
X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein. 31 0.69
CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein. 31 0.69
BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear ribonucle... 31 0.69
BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear ribonucle... 31 0.69
BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein. 31 0.69
BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear ribonucle... 31 0.69
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 30 1.6
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 29 3.7
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 29 3.7
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 29 3.7
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 29 3.7
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 29 3.7
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 29 3.7
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 29 3.7
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 29 3.7
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 29 3.7
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 29 3.7
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 29 3.7
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 29 4.8
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 29 4.8
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 29 4.8
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 29 4.8
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 29 4.8
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 29 4.8
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 29 4.8
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 29 4.8
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 29 4.8
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 29 4.8
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 29 4.8
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 28 6.4
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 119 bits (286), Expect = 3e-27
Identities = 55/69 (79%), Positives = 60/69 (86%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMV 312
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+ N+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 313 VIRGNSIIM 339
VIRGNSIIM
Sbjct: 61 VIRGNSIIM 69
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 119 bits (286), Expect = 3e-27
Identities = 55/69 (79%), Positives = 60/69 (86%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMV 312
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+ N+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 313 VIRGNSIIM 339
VIRGNSIIM
Sbjct: 61 VIRGNSIIM 69
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 119 bits (286), Expect = 3e-27
Identities = 55/69 (79%), Positives = 60/69 (86%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMV 312
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+ N+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 313 VIRGNSIIM 339
VIRGNSIIM
Sbjct: 61 VIRGNSIIM 69
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 119 bits (286), Expect = 3e-27
Identities = 55/69 (79%), Positives = 60/69 (86%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMV 312
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+ N+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 313 VIRGNSIIM 339
VIRGNSIIM
Sbjct: 61 VIRGNSIIM 69
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 119 bits (286), Expect = 3e-27
Identities = 55/69 (79%), Positives = 60/69 (86%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMV 312
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+ N+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 313 VIRGNSIIM 339
VIRGNSIIM
Sbjct: 61 VIRGNSIIM 69
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 119 bits (286), Expect = 3e-27
Identities = 55/69 (79%), Positives = 60/69 (86%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMV 312
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+ N+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 313 VIRGNSIIM 339
VIRGNSIIM
Sbjct: 61 VIRGNSIIM 69
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 119 bits (286), Expect = 3e-27
Identities = 55/69 (79%), Positives = 60/69 (86%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMV 312
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+ N+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 313 VIRGNSIIM 339
VIRGNSIIM
Sbjct: 61 VIRGNSIIM 69
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 119 bits (286), Expect = 3e-27
Identities = 55/69 (79%), Positives = 60/69 (86%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMV 312
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+ N+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 313 VIRGNSIIM 339
VIRGNSIIM
Sbjct: 61 VIRGNSIIM 69
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 119 bits (286), Expect = 3e-27
Identities = 55/69 (79%), Positives = 60/69 (86%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMV 312
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+ N+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 313 VIRGNSIIM 339
VIRGNSIIM
Sbjct: 61 VIRGNSIIM 69
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 93.1 bits (221), Expect = 2e-19
Identities = 43/57 (75%), Positives = 48/57 (84%)
Frame = +1
Query: 169 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMVVIRGNSIIM 339
MDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+ N+GMVVIRGNSIIM
Sbjct: 1 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIM 57
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 57.6 bits (133), Expect = 9e-09
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
Frame = +1
Query: 154 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRXNVGM 309
+L K++DK + +K GR +G+L+GFDP +NLVLD ++E +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 310 VVIRGNSIIM 339
VV RG S+++
Sbjct: 74 VVCRGTSVVL 83
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 57.6 bits (133), Expect = 9e-09
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
Frame = +1
Query: 154 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRXNVGM 309
+L K++DK + +K GR +G+L+GFDP +NLVLD ++E +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 310 VVIRGNSIIM 339
VV RG S+++
Sbjct: 74 VVCRGTSVVL 83
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 57.6 bits (133), Expect = 9e-09
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
Frame = +1
Query: 154 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRXNVGM 309
+L K++DK + +K GR +G+L+GFDP +NLVLD ++E +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 310 VVIRGNSIIM 339
VV RG S+++
Sbjct: 74 VVCRGTSVVL 83
>BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 133
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +1
Query: 169 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXN---VGMVVIRGNSIIM 339
+DKK + L GR + G LR D F NLVL ++VE G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
>AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein.
Length = 133
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +1
Query: 169 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXN---VGMVVIRGNSIIM 339
+DKK + L GR + G LR D F NLVL ++VE G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
>AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein.
Length = 133
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +1
Query: 169 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXN---VGMVVIRGNSIIM 339
+DKK + L GR + G LR D F NLVL ++VE G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +1
Query: 127 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXN- 300
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 301 VGMVVIRGNSII 336
G IRGN+++
Sbjct: 60 YGDAFIRGNNVL 71
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +1
Query: 127 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXN- 300
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 301 VGMVVIRGNSII 336
G IRGN+++
Sbjct: 60 YGDAFIRGNNVL 71
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +1
Query: 127 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXN- 300
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 301 VGMVVIRGNSII 336
G IRGN+++
Sbjct: 60 YGDAFIRGNNVL 71
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +1
Query: 127 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXN- 300
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 301 VGMVVIRGNSII 336
G IRGN+++
Sbjct: 60 YGDAFIRGNNVL 71
>AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein.
Length = 145
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 8/54 (14%)
Frame = +1
Query: 202 GRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRXNVGMVVIRGNSIIM 339
GR +G+L+GFDP +NLVLD ++E +D +G+VV RG S+++
Sbjct: 72 GRPRSGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVL 125
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/63 (28%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE----ECKDGQRXNVGMVVIRG 324
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + ++ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 325 NSI 333
+++
Sbjct: 65 DNV 67
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/63 (28%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE----ECKDGQRXNVGMVVIRG 324
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + ++ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 325 NSI 333
+++
Sbjct: 65 DNV 67
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/63 (28%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE----ECKDGQRXNVGMVVIRG 324
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + ++ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 325 NSI 333
+++
Sbjct: 65 DNV 67
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/63 (28%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE----ECKDGQRXNVGMVVIRG 324
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + ++ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 325 NSI 333
+++
Sbjct: 65 DNV 67
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/63 (28%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE----ECKDGQRXNVGMVVIRG 324
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + ++ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 325 NSI 333
+++
Sbjct: 65 DNV 67
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = +1
Query: 136 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-XNV 303
S+ P EL K + ++ I + + + + G L GFD F+N+VL++ E +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 304 GMVVIRGNSIIM 339
+++ GN+I M
Sbjct: 70 DQILLNGNNITM 81
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = +1
Query: 136 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-XNV 303
S+ P EL K + ++ I + + + + G L GFD F+N+VL++ E +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 304 GMVVIRGNSIIM 339
+++ GN+I M
Sbjct: 70 DQILLNGNNITM 81
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = +1
Query: 136 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-XNV 303
S+ P EL K + ++ I + + + + G L GFD F+N+VL++ E +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 304 GMVVIRGNSIIM 339
+++ GN+I M
Sbjct: 70 DQILLNGNNITM 81
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +1
Query: 211 VTGVLRGFDPFMNLVLDESVE-ECKDGQRXNVGMVVIRGNSIIM 339
+ G + GFD +MNLVLD++ E K R +G ++++G++I +
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITL 86
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +1
Query: 211 VTGVLRGFDPFMNLVLDESVE-ECKDGQRXNVGMVVIRGNSIIM 339
+ G + GFD +MNLVLD++ E K R +G ++++G++I +
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITL 86
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +1
Query: 211 VTGVLRGFDPFMNLVLDESVE-ECKDGQRXNVGMVVIRGNSIIM 339
+ G + GFD +MNLVLD++ E K R +G ++++G++I +
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITL 86
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +1
Query: 211 VTGVLRGFDPFMNLVLDESVE-ECKDGQRXNVGMVVIRGNSIIM 339
+ G + GFD +MNLVLD++ E K R +G ++++G++I +
Sbjct: 32 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITL 75
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +1
Query: 211 VTGVLRGFDPFMNLVLDESVE-ECKDGQRXNVGMVVIRGNSIIM 339
+ G + GFD +MNLVLD++ E K R +G ++++G++I +
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITL 86
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +1
Query: 211 VTGVLRGFDPFMNLVLDESVE-ECKDGQRXNVGMVVIRGNSIIM 339
+ G + GFD +MNLVLD++ E K R +G ++++G++I +
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITL 86
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +1
Query: 211 VTGVLRGFDPFMNLVLDESVE-ECKDGQRXNVGMVVIRGNSIIM 339
+ G + GFD +MNLVLD++ E K R +G ++++G++I +
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITL 86
>X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein.
Length = 86
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 151 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMVVIRGNS 330
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 331 II 336
++
Sbjct: 69 VL 70
>CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein.
Length = 86
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 151 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMVVIRGNS 330
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 331 II 336
++
Sbjct: 69 VL 70
>BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 151 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMVVIRGNS 330
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 331 II 336
++
Sbjct: 69 VL 70
>BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 151 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMVVIRGNS 330
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 331 II 336
++
Sbjct: 69 VL 70
>BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein.
Length = 86
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 151 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMVVIRGNS 330
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 331 II 336
++
Sbjct: 69 VL 70
>BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 151 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMVVIRGNS 330
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 331 II 336
++
Sbjct: 69 VL 70
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE-------SVEECK 282
M+ ++ + +D ++ L GR G + FD MNL+L DE + E+ +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAE 60
Query: 283 DGQRXNVGMVVIRGNSII 336
++ +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Frame = +1
Query: 154 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQRXN---V 303
++ + +D ++ L GR G + FD MNL+L DE + K +R +
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 304 GMVVIRGNSII 336
G+V++RG +++
Sbjct: 61 GLVLLRGENLV 71
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Frame = +1
Query: 154 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQRXN---V 303
++ + +D ++ L GR G + FD MNL+L DE + K +R +
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 304 GMVVIRGNSII 336
G+V++RG +++
Sbjct: 61 GLVLLRGENLV 71
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE-------ECKDGQ 291
M+ ++ + +D ++ L GR G + FD MNL+L + E K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPE 60
Query: 292 RXN---VGMVVIRGNSII 336
R +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,114,019
Number of Sequences: 237096
Number of extensions: 894132
Number of successful extensions: 1454
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1852524224
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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