Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_F19
(339 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G ... 106 5e-24
AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear... 106 5e-24
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 55 1e-08
AC025726-13|AAK73913.1| 77|Caenorhabditis elegans Lsm sm-like ... 46 5e-06
Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical pr... 41 2e-04
AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 40 6e-04
Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 38 0.002
Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical p... 36 0.007
L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear ... 36 0.007
AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical ... 36 0.010
Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical pr... 31 0.16
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 31 0.28
U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like pro... 29 0.64
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr... 28 1.5
U23937-1|AAA65451.1| 71|Caenorhabditis elegans small nuclear r... 28 1.5
AL117204-26|CAB55132.1| 136|Caenorhabditis elegans Hypothetical... 28 1.5
Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z81099-2|CAB03188.2| 297|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z75549-3|CAA99915.1| 301|Caenorhabditis elegans Hypothetical pr... 27 4.5
AC024842-7|AAF59620.1| 457|Caenorhabditis elegans Hypothetical ... 27 4.5
U50071-5|AAA93443.1| 2039|Caenorhabditis elegans Uncoordinated p... 26 7.9
>AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G
protein.
Length = 77
Score = 106 bits (254), Expect = 5e-24
Identities = 45/69 (65%), Positives = 58/69 (84%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMV 312
MSK HPPELKK+MDK++ +KLN R V+G+LRGFDPFMN+V+DE+VE KDG N+GM
Sbjct: 1 MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60
Query: 313 VIRGNSIIM 339
VIRGNS+++
Sbjct: 61 VIRGNSVVI 69
>AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 7 protein.
Length = 77
Score = 106 bits (254), Expect = 5e-24
Identities = 45/69 (65%), Positives = 58/69 (84%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMV 312
MSK HPPELKK+MDK++ +KLN R V+G+LRGFDPFMN+V+DE+VE KDG N+GM
Sbjct: 1 MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60
Query: 313 VIRGNSIIM 339
VIRGNS+++
Sbjct: 61 VIRGNSVVI 69
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 55.2 bits (127), Expect = 1e-08
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 8/68 (11%)
Frame = +1
Query: 154 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNV--------GM 309
+L +F+DK++ +K GR +GVLRGFD +N+VLD+ E +D Q +V G+
Sbjct: 15 DLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGL 74
Query: 310 VVIRGNSI 333
+V RG +I
Sbjct: 75 IVARGTAI 82
>AC025726-13|AAK73913.1| 77|Caenorhabditis elegans Lsm sm-like
protein protein 6 protein.
Length = 77
Score = 46.4 bits (105), Expect = 5e-06
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +1
Query: 133 MSKAHPPE--LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXN-V 303
MSK P LKK + K + +KLN+G G+L D +MN+ L E EE +GQ N
Sbjct: 1 MSKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIAL-EQTEEYSNGQLQNKY 59
Query: 304 GMVVIRGNSII 336
G IRGN+++
Sbjct: 60 GDAFIRGNNVL 70
>Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical
protein F40F8.9 protein.
Length = 125
Score = 41.1 bits (92), Expect = 2e-04
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Frame = +1
Query: 169 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE-------CKDGQRXNVGMVVIRGN 327
+DKKL + L GR + G LR D F NL+L++ VE C+ GQ G ++IRG
Sbjct: 18 LDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ----GFMLIRGE 73
Query: 328 SI 333
++
Sbjct: 74 NV 75
>AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like
protein protein 8 protein.
Length = 98
Score = 39.5 bits (88), Expect = 6e-04
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE----SVEECKDGQRXNVGMVVIRG 324
L +M++ +++ GR + G+L+GFD +NLV+++ S E + +G+ +IRG
Sbjct: 5 LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRG 64
Query: 325 NSI 333
++
Sbjct: 65 ENV 67
>Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical
protein F28F8.3 protein.
Length = 91
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESV--EECKDGQR-XNVGMVVIRGN 327
+ K + K+ + + + + G L GFD ++N+VL++ V E DG+R + +++ GN
Sbjct: 18 IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGN 77
Query: 328 SIIM 339
I M
Sbjct: 78 HITM 81
>Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical
protein Y49E10.15 protein.
Length = 90
Score = 35.9 bits (79), Expect = 0.007
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 217 GVLRGFDPFMNLVLDESVE-ECKDGQRXNVGMVVIRGNSIIM 339
G + GFD FMN+V DE+ E K R +G ++++G++I +
Sbjct: 41 GYIIGFDEFMNVVFDEAEEVNMKTKGRNKIGRILLKGDNITL 82
>L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 5 protein.
Length = 85
Score = 35.9 bits (79), Expect = 0.007
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +1
Query: 151 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMVVIRGNS 330
P L K + KL G GVL D +MNL L + E + N+G ++IR N+
Sbjct: 11 PFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNN 70
Query: 331 II 336
++
Sbjct: 71 VL 72
>AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical
protein Y62E10A.12 protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.010
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Frame = +1
Query: 118 KKHITMSKA--HPPELKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE 276
KK +T+S P +L + +D+++ +K+ R + G LR FD +N+VL E VEE
Sbjct: 5 KKEVTLSATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSE-VEE 59
>Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical
protein W08E3.1 protein.
Length = 160
Score = 31.5 bits (68), Expect = 0.16
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Frame = +1
Query: 127 ITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECK-------- 282
+T+SK + ++ ++ ++ I L GR G + FD MN++L E E +
Sbjct: 1 MTISKNN--KMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKK 58
Query: 283 -DGQRXNV-GMVVIRGNSII 336
DG+ + G+V++RG I+
Sbjct: 59 TDGEEKRILGLVLVRGEHIV 78
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 30.7 bits (66), Expect = 0.28
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 230 PRNTPVTARPAFSFIDNFLSMNFFNSGGCAFDIVMCFLKYYNTELML 90
P PVT RPA N SM ++S C F + +C + EL+L
Sbjct: 1709 PAGIPVTGRPALKLEMNCTSMKHYDSFDC-FRLKVCDMSVQLDELLL 1754
>U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like
protein protein 4 protein.
Length = 123
Score = 29.5 bits (63), Expect = 0.64
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-XNVGMVVIRGNSI 333
LK + + ++L G G L+ D +MN+ L + + KDG + + +RG++I
Sbjct: 8 LKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTI 67
>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical protein
ZK1193.2 protein.
Length = 1250
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 70 YTKIHDNNINSVL*YFKKHITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGF-DP 240
YT I+ NNI SV+ Y + P ++KF+ S + G G GF DP
Sbjct: 1131 YTGINGNNIQSVMDYIVLQNNSAPFRPAPVRKFLMLLSSQGWDKGNVSEGKENGFSDP 1188
>U23937-1|AAA65451.1| 71|Caenorhabditis elegans small nuclear
ribonucleoprotein protein.
Length = 71
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 181 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMVVIRGNSI 333
++++ G G L + MN L E+V +DG+ + V IRGN I
Sbjct: 5 VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 55
>AL117204-26|CAB55132.1| 136|Caenorhabditis elegans Hypothetical
protein Y116A8C.42 protein.
Length = 136
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 181 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMVVIRGNSI 333
++++ G G L + MN L E+V +DG+ + V IRGN I
Sbjct: 19 VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 69
>Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical
protein R11A8.8 protein.
Length = 293
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDP 240
+ K + P+ K DKK +IKL GR ++ DP
Sbjct: 248 LGKGYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDP 283
>Z81099-2|CAB03188.2| 297|Caenorhabditis elegans Hypothetical
protein K08F9.3 protein.
Length = 297
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -2
Query: 161 FNSGGCAFDIVMCFLKYYNTELMLLSW 81
FN G C D + F++ Y + + L W
Sbjct: 178 FNKGSCKIDCITSFIEKYQVDGVELHW 204
>Z75549-3|CAA99915.1| 301|Caenorhabditis elegans Hypothetical
protein T19C4.3 protein.
Length = 301
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = -2
Query: 203 PAFSFIDNFLSMNFFNSGGCAFDIVMCFLKYYNTELMLLSWIFVY*MNFQPIEFCQMNLT 24
P + F DN MNFF A M +++Y T L+ ++ + V N++ E T
Sbjct: 76 PVYMFFDNNFPMNFFT----AMSYHMAYVQYSTTALISVNRLSVL-WNYKTFEPIWRKFT 130
Query: 23 FLLYSTV 3
+ + V
Sbjct: 131 WFIMFVV 137
>AC024842-7|AAF59620.1| 457|Caenorhabditis elegans Hypothetical
protein Y59H11AR.4 protein.
Length = 457
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 152 GGCAFDIVMCFLKYYNTELMLLSWIFV 72
GG IVMC + YY L+ +WI +
Sbjct: 37 GGTITLIVMCLITYYTATLLGNNWIIM 63
>U50071-5|AAA93443.1| 2039|Caenorhabditis elegans Uncoordinated
protein 44, isoform a protein.
Length = 2039
Score = 25.8 bits (54), Expect = 7.9
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 145 HPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR 294
HP E ++ ++ SI L AG A G PF N DE + CK +R
Sbjct: 1777 HPQESEE--PRRFSIFLEAGGAEKD---GSSPFDNQEEDEPIASCKQFER 1821
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,985,143
Number of Sequences: 27780
Number of extensions: 155394
Number of successful extensions: 410
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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