Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F19
         (339 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   1.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   1.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   3.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   4.1  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         20   7.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   7.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   7.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    20   7.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    20   7.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   9.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   9.4  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 205 RAVTGVLRGFDPFMNLVLDESVEECKD 285
           R V   + GFDP++    DE +E+  D
Sbjct: 225 RMVDENINGFDPYVKTPNDEELEKPTD 251


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 6/16 (37%), Positives = 14/16 (87%)
 Frame = -1

Query: 48  RILSNEFNFSTIFYRL 1
           +I++N+FNF+ + +R+
Sbjct: 390 KIINNDFNFNDVNFRI 405


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -1

Query: 48  RILSNEFNFSTIFYRL 1
           +I++N+FNF  + +R+
Sbjct: 388 KIVNNDFNFDEVNFRI 403


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 75  CILDEFPTHRILSNEFNF 22
           C LD  PT+ ++S+  +F
Sbjct: 184 CALDLTPTYAVVSSSISF 201


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = -1

Query: 48  RILSNEFNFSTIFYRL 1
           ++++N+FNF  + +R+
Sbjct: 387 KMVNNDFNFDDVNFRI 402


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = -3

Query: 328 CYHELPPSQHXYADRLYTPRLIHQELNS 245
           CY+   PS    ++   TP+  H    S
Sbjct: 388 CYYPYHPSTQEDSEEHLTPKRFHSRAAS 415


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = -3

Query: 328 CYHELPPSQHXYADRLYTPRLIHQELNS 245
           CY+   PS    ++   TP+  H    S
Sbjct: 388 CYYPYHPSTQEDSEEHLTPKRFHSRAAS 415


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = -1

Query: 48  RILSNEFNFSTIFYRL 1
           ++++N+FNF  + +R+
Sbjct: 387 KMVNNDFNFDDVNFRI 402


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = -1

Query: 48  RILSNEFNFSTIFYRL 1
           ++++N+FNF  + +R+
Sbjct: 387 KMVNNDFNFDDVNFRI 402


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 9/41 (21%), Positives = 17/41 (41%)
 Frame = -1

Query: 174 VHEFFQFWWMCF*HCNVLFKIL*YGINVIVVDFCILDEFPT 52
           +   F  W   F   N ++  + YGI+       +  +FP+
Sbjct: 308 ISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPS 348


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 232 FDPFMNLVLDESVE 273
           +DP + LV+DE++E
Sbjct: 195 WDPDVPLVVDENIE 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,696
Number of Sequences: 438
Number of extensions: 1909
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)