Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_F19
(339 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 89 5e-19
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 88 2e-18
At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putati... 60 4e-10
At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putati... 60 4e-10
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 49 7e-07
At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putati... 48 2e-06
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 46 5e-06
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 46 5e-06
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta... 41 2e-04
At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F, puta... 38 0.001
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 38 0.002
At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F, puta... 38 0.002
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 37 0.003
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati... 35 0.012
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 33 0.049
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 33 0.049
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 31 0.15
At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putati... 31 0.26
At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putati... 30 0.34
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 29 0.79
At5g55560.1 68418.m06923 protein kinase family protein contains ... 29 1.0
At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL... 28 1.4
At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containi... 28 1.8
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 27 3.2
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 27 4.2
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi... 27 4.2
At5g52500.1 68418.m06513 expressed protein strong similarity to ... 25 9.7
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 25 9.7
At4g10640.1 68417.m01738 calmodulin-binding family protein conta... 25 9.7
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 89.4 bits (212), Expect = 5e-19
Identities = 44/69 (63%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Frame = +1
Query: 133 MSKA-HPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGM 309
MS++ PP+LKK+MDKKL IKLNA R VTG LRGFD FMNLV+D +V E + ++GM
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGM 59
Query: 310 VVIRGNSII 336
VVIRGNSI+
Sbjct: 60 VVIRGNSIV 68
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 87.8 bits (208), Expect = 2e-18
Identities = 44/69 (63%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Frame = +1
Query: 133 MSKA-HPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGM 309
MS++ PP+LKK+MDKKL IKLNA R V G LRGFD FMNLV+D +VE D + ++GM
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGD-DKTDIGM 59
Query: 310 VVIRGNSII 336
VVIRGNSI+
Sbjct: 60 VVIRGNSIV 68
>At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 60.1 bits (139), Expect = 4e-10
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 8/70 (11%)
Frame = +1
Query: 154 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRXNVGM 309
+L KF+DK + +KL GR VTG L+G+D +NLVLDE+VE +D Q +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69
Query: 310 VVIRGNSIIM 339
+V RG ++++
Sbjct: 70 IVCRGTAVML 79
>At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 60.1 bits (139), Expect = 4e-10
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 8/70 (11%)
Frame = +1
Query: 154 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRXNVGM 309
+L KF+DK + +KL GR VTG L+G+D +NLVLDE+VE +D Q +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69
Query: 310 VVIRGNSIIM 339
+V RG ++++
Sbjct: 70 IVCRGTAVML 79
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 49.2 bits (112), Expect = 7e-07
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 4/63 (6%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE---ECKDG-QRXNVGMVVIRG 324
L+ +D+ +S+ N GR + GVL+GFD N++LDES E K+G Q+ +G+ +IRG
Sbjct: 7 LETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRG 66
Query: 325 NSI 333
++I
Sbjct: 67 DNI 69
>At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116
Length = 128
Score = 48.0 bits (109), Expect = 2e-06
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ---RXNVGMVVIRGN 327
L ++DKKL + L GR + G+LR FD F N VL+E+ E G +G+ +IRG
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIPLGLYIIRGE 74
Query: 328 SIIM 339
++++
Sbjct: 75 NVVL 78
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 46.4 bits (105), Expect = 5e-06
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR---XNVGMVVIRGN 327
L ++D+KL + L GR + G LR FD F N VL+ + E G++ +G+ VIRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74
Query: 328 SIIM 339
++++
Sbjct: 75 NVVL 78
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 46.4 bits (105), Expect = 5e-06
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR---XNVGMVVIRGN 327
L ++D+KL + L GR + G LR FD F N VL+ + E G++ +G+ VIRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74
Query: 328 SIIM 339
++++
Sbjct: 75 NVVL 78
>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNV-GMVVIRGNSI 333
LK K + +KLN+G G+L D +MN+ ++++ EE +GQ N G +RGN++
Sbjct: 19 LKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQT-EEYVNGQLKNTYGDAFVRGNNV 77
Query: 334 I 336
+
Sbjct: 78 L 78
>At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXN-VGMVVIRGNSI 333
LK + + +KLN+G G L D +MN+ ++++ EE +GQ N G IRGN++
Sbjct: 19 LKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIRGNNV 77
Query: 334 I 336
+
Sbjct: 78 L 78
>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +1
Query: 211 VTGVLRGFDPFMNLVLDESVE-ECKDGQRXNVGMVVIRGNSIIM 339
+ G + GFD +MNLVLDE+ E K R +G ++++G++I +
Sbjct: 39 IEGRITGFDEYMNLVLDEAEEVSIKKNTRKPLGRILLKGDNITL 82
>At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F,
putative / snRNP-F, putative / Sm protein F, putative
similar to SWISS-PROT:Q15356 small nuclear
ribonucleoprotein F (snRNP-F, Sm protein F, Sm-F, SmF)
[Mouse]
Length = 88
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 151 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RXNVGMVVIRGN 327
P L K + +KL G G L D +MNL L + EE DGQ N+G ++IR N
Sbjct: 10 PFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNT-EEYIDGQLTGNLGEILIRCN 68
Query: 328 SII 336
+++
Sbjct: 69 NVL 71
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +1
Query: 211 VTGVLRGFDPFMNLVLDESVE-ECKDGQRXNVGMVVIRGNSIIM 339
+ G + GFD +MNLVLDE+ E K R +G ++++G++I +
Sbjct: 39 IEGRITGFDEYMNLVLDEAEEVSIKKKTRKPLGRILLKGDNITL 82
>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm5 [Homo sapiens]
SWISS-PROT:Q9Y4Y9
Length = 88
Score = 35.1 bits (77), Expect = 0.012
Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +1
Query: 136 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-XNV 303
S+ P EL + + K+ + + + + G+L+GFD ++N+VL++ E +G+R +
Sbjct: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 65
Query: 304 GMVVIRGNSI 333
+++ GN+I
Sbjct: 66 DQILLNGNNI 75
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 33.1 bits (72), Expect = 0.049
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECK----DGQRXN 300
MS + ++ +F++ ++ + + GR + G FD MNLVL + E K G++ N
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 301 --------VGMVVIRGNSII 336
+G+V++RG +I
Sbjct: 61 EEREDRRTLGLVLLRGEEVI 80
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 33.1 bits (72), Expect = 0.049
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECK----DGQRXN 300
MS + ++ +F++ ++ + + GR + G FD MNLVL + E K G++ N
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 301 --------VGMVVIRGNSII 336
+G+V++RG +I
Sbjct: 61 EEREDRRTLGLVLLRGEEVI 80
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 31.5 bits (68), Expect = 0.15
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE-----ECKDGQRX 297
MS + ++ +F++ ++ + + GR + G FD MNLVL + E K ++
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 298 N--------VGMVVIRGNSII 336
N +G+V++RG +I
Sbjct: 61 NEEREERRTLGLVLLRGEEVI 81
>At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 98
Score = 30.7 bits (66), Expect = 0.26
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 169 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE 276
+D+++ +KL + R + G L FD +N++L + VEE
Sbjct: 20 LDERIYVKLRSDRELRGKLHAFDQHLNMILGD-VEE 54
>At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein
LSm4 [Mus musculus]
Length = 129
Score = 30.3 bits (65), Expect = 0.34
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 157 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-XNVGMVVIRGNSI 333
LK + ++L G G L D +MN+ L E + KDG R + IRGN+I
Sbjct: 7 LKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTI 66
>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 97
Score = 29.1 bits (62), Expect = 0.79
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 13/70 (18%)
Frame = +1
Query: 169 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVL-------------DESVEECKDGQRXNVGM 309
+++++ +KL + R + G L FD +N++L DE+ EE + V
Sbjct: 20 IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPF 79
Query: 310 VVIRGNSIIM 339
+ +RG+ +I+
Sbjct: 80 LFVRGDGVIL 89
>At5g55560.1 68418.m06923 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 314
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/62 (25%), Positives = 34/62 (54%)
Frame = +1
Query: 133 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRXNVGMV 312
++K + PE K F++K ++ + A + +L DPF + +LD+ E+ ++ G +
Sbjct: 255 LNKVNDPEAKAFIEKCIA-QPRARPSAAELL--CDPFFDGILDDDDEDGENNDNNGAGRI 311
Query: 313 VI 318
V+
Sbjct: 312 VV 313
>At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL3)
identical to IAA-amino acid hydrolase homolog ILL3
[Arabidopsis thaliana] gi|3420801|gb|AAC31939
Length = 428
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -2
Query: 215 VTARPAFSFIDNFLSMNFFNSGGCAFDIVMCFLKYYNT 102
+ +R + + LS+ F SGG FD++ ++++ T
Sbjct: 245 IISREVDPLLSHVLSVTFMKSGGSEFDVIPAYVEFGGT 282
>At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containing
protein contains similarity to RNA binding protein PufA
[Dictyostelium discoideum] gi|5106561|gb|AAD39751
Length = 524
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 157 LKKFMDKK--LSIKLNAGRAVTGVLR-GFDPFMNLVLDESVEECKDGQRXNV 303
L+KF+D+ + + + + V+ G DPF N ++ + +E C + QR +
Sbjct: 259 LQKFVDEGNFVDVMIIFKEVINNVIELGTDPFGNYLIQKLIEVCNEEQRTQI 310
>At5g15920.1 68418.m01862 structural maintenance of chromosomes
(SMC) family protein (MSS2) similar to SMC-related
protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1053
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 14 IVEKLNSFDKIRWVGNSSNIQKSTTITLIPYYNILKSTL 130
I K+++ +K W+ N S + K + +I +NI + L
Sbjct: 108 IFRKIDTRNKSEWMFNGSTVSKKDIVEIIQKFNIQVNNL 146
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 163 KFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD-ESVEECKDGQRXNVGMVVI 318
K M K+ ++KL GV+ + F+N++ D SVE+ KD + ++
Sbjct: 153 KAMKKRSTLKLLLELYYVGVIEDSNIFINIIKDLTSVEQLKDRDTTQTNLTLL 205
>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
protein associated factor (GI:2827282) [Homo sapiens];
similar to Transcription initiation factor TFIID 150 kDa
subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
[Drosophila melanogaster]
Length = 1390
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -2
Query: 143 AFDIVMCFLKYYNTELMLLS---WIFVY*MNFQPIEFCQMNLTFL 18
A + ++ LKY + S W+ V + +EFCQ +LTFL
Sbjct: 785 AVEFILQLLKYNDNSGNSYSDVFWLAVLVQSVGDLEFCQQSLTFL 829
>At5g52500.1 68418.m06513 expressed protein strong similarity to
unknown protein (emb|CAB68146.1)
Length = 363
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 70 YTKIHDNNINSVL*YFKKHITMSKAHP 150
+T+I + + +SVL +F KH S+ +P
Sbjct: 270 FTRIRNRSPDSVLFFFSKHKNASEVNP 296
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 284 SLHSSTDSSRTKFMNGSKPRNTPVTA 207
S HS T + R+K G KP +TP A
Sbjct: 663 SSHSQTANQRSKPAFGEKPTSTPKVA 688
>At4g10640.1 68417.m01738 calmodulin-binding family protein contains
IQ calmodulin-binding motif, Pfam:PF00612
Length = 423
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 275 SSTDSSRTKFMNGSKPRNTPVTARPAFSFID 183
S+T+S++ K S PR P+TA+ + +
Sbjct: 348 SATESAKAKARTQSTPRRRPMTAKKRLCYAE 378
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,326,501
Number of Sequences: 28952
Number of extensions: 135568
Number of successful extensions: 331
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -