Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F15
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr 2...   103   2e-23
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    27   2.3  
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom...    27   2.3  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   4.1  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    25   9.5  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.5  

>SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 85

 Score =  103 bits (247), Expect = 2e-23
 Identities = 41/80 (51%), Positives = 59/80 (73%)
 Frame = +2

Query: 128 MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVXNES 307
           M +R    ++LE LQ++Y+G G+A TTKYEW++NQHRD+  S +GHP LL+Y A    E 
Sbjct: 1   MADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEP 60

Query: 308 KARVKFNLMERMLQPCGPPP 367
           + +V+ NL+E+M+ PCGPPP
Sbjct: 61  RVQVRKNLLEKMIMPCGPPP 80


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 286 KVTQQIRMTHVTAARVAMLVHKPFI 212
           K+T  + MTH+ +A+   L +KP I
Sbjct: 369 KITTDLEMTHLESAKKKYLAYKPLI 393


>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 310 FRFIXYDRKVTQQIRMTHVTAARVAMLVHKPFIFCSVG 197
           ++++    K  + +R    +A R AML HKP +  S G
Sbjct: 155 YKYLECSAKTNEGVREVFESATRAAMLKHKPKVKPSSG 192


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -3

Query: 457  YVMIRDSKSNNK*ISLIXFLKSKRLIFRLFWRWAAWLKHSFHQIE 323
            Y  I D    N  +SL      K  +FR  WR A+W K S   ++
Sbjct: 985  YAEIDDRNPEN--VSLYHIALHKINVFRDLWRLASWHKESARTVK 1027


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -3

Query: 256 VTAARVAMLVHKPFIFCSVGVACAYIFAL*MFKLTVNVVSFTH 128
           +T   +A  ++ P  F   G  CA +FA  +  +   +   TH
Sbjct: 199 LTRLYLARFLNSPQYFIPYGTLCANVFATLLLSIMYMIPQITH 241


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -3

Query: 256 VTAARVAMLVHKPFIFCSVGVACAYIFAL*MFKLTVNVVSFTH 128
           +T   +A  ++ P  F   G  CA +FA  +  +   +   TH
Sbjct: 199 LTRLYLARFLNSPQYFIPYGTLCANVFATLLLSIMYMIPQITH 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,253
Number of Sequences: 5004
Number of extensions: 44344
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)