Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F12
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    29   0.39 
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    25   6.3  
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    25   6.3  
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   8.4  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 218 RFVIDYNLHSGKLIDYTSNMTQ 153
           RF  DY LH  + IDY SN T+
Sbjct: 875 RFSFDYGLHWSEWIDYLSNKTE 896


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 224 WNRFVIDYNLHSGKLIDY 171
           WN  V+D + H+  +IDY
Sbjct: 84  WNTLVVDGDSHASAMIDY 101


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 370 NISSKGSELCIFFNKSLYYALMC 302
           N+S KG  +C+ F KS    ++C
Sbjct: 272 NLSMKGHSMCVDFVKSFNLPMIC 294


>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 269 CIXRWLRYIHCTH*CIIKRFIKKNT*FTSFTGNIF 373
           C+   +RYI+    C+++      T FT F+  ++
Sbjct: 34  CVHHRVRYIYVPRHCLLRSLTYATTNFTKFSKFVY 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,212
Number of Sequences: 5004
Number of extensions: 28107
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)