Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F12
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical...    28   3.3  
Z72502-2|CAA96588.1|  423|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AC025723-12|AAK29938.1|  215|Caenorhabditis elegans Hypothetical...    27   10.0 

>AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical
           protein Y54G2A.40 protein.
          Length = 636

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 140 CFNKIASCYLCSQ*VCQNVNYSRSQI 217
           CFNK  +C +C++ + +  NY+  QI
Sbjct: 41  CFNKYKNCPICAKPLVRTENYAARQI 66


>Z72502-2|CAA96588.1|  423|Caenorhabditis elegans Hypothetical
           protein C08B6.5 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = -3

Query: 382 YLAKNISSKGSELCIFFNKSLYYALMCTMNITQPSXYASK*XPTYXLSQTKYIGIDL 212
           Y+A   S    +LC  FNK+L   L    +IT    Y +K  P     Q K   + L
Sbjct: 306 YVAFGFSISNRKLCQMFNKALLKILPGIASITLGPGYGTKKQPEDITVQVKKTRLSL 362


>AC025723-12|AAK29938.1|  215|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.1 protein.
          Length = 215

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 311 CIIKRFIKKNT*FTSFTGNIFCQVXIFQVNHC 406
           C  KR ++KN  +T   GN  C V   + N C
Sbjct: 62  CFFKRSVRKNIIYTCIAGNWKCVVDKGRRNWC 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,110,667
Number of Sequences: 27780
Number of extensions: 155184
Number of successful extensions: 304
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)