Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F12
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g06210.2 68415.m00683 phosphoprotein-related low similarity t...    27   5.3  
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t...    27   5.3  
At1g58242.1 68414.m06622 hypothetical protein                          27   5.3  
At1g15780.1 68414.m01893 expressed protein                             27   7.0  

>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
           phosphoprotein from Mus musculus GI:1236239; contains
           Pfam profile PF00515 TPR Domain
          Length = 852

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 79  LFNLSYLLQSIHYTELVTTFMFQ 147
           LFNL+ LL+ IH TE   TFM++
Sbjct: 288 LFNLARLLEQIHKTE-AATFMYR 309


>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
           phosphoprotein from Mus musculus GI:1236239; contains
           Pfam profile PF00515 TPR Domain
          Length = 1064

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 79  LFNLSYLLQSIHYTELVTTFMFQ 147
           LFNL+ LL+ IH TE   TFM++
Sbjct: 500 LFNLARLLEQIHKTE-AATFMYR 521


>At1g58242.1 68414.m06622 hypothetical protein
          Length = 91

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 330 LKKIHSSLPLLEIFFAKXQYFKSTIAVIINKCI 428
           +KKI+S L ++ +F      + STI V +  C+
Sbjct: 6   IKKIYSVLMIVALFIMMVSTYASTIEVCVKHCV 38


>At1g15780.1 68414.m01893 expressed protein
          Length = 1335

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 133 SSQAPCNESTAINTTS*INQNVSVKN 56
           SS  P +  T  NTTS +NQN +++N
Sbjct: 159 SSMPPVSSITNNNTTSVVNQNANMQN 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,262,134
Number of Sequences: 28952
Number of extensions: 127609
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)