Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F08
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    27   1.8  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    26   5.4  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    25   7.1  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.1  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   7.1  
SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.4  

>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 559 ILKRYCSLSIVNAVFIFFCECIYF 488
           I++ YC+  I N    F C+C Y+
Sbjct: 65  IVRFYCAYHITNPDVYFLCQCTYY 88


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 256 NWHIWFVQIRLTIENS*DRYIVMNVFIHFDLDINLIRPF 140
           N H+ F  +   I     R + MNV I FD   N I+PF
Sbjct: 235 NTHVRFPTLTANIRQRRGRKVAMNVPIFFDK--NTIKPF 271


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 323 QNIIWTKNSTIMLLNLY 373
           QN++WT  STI ++ L+
Sbjct: 297 QNLVWTNQSTIPMMTLH 313


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 212 ILDSQPNLYKPNMPVPTYNHNQNISQQEXSDVNEM 316
           +L S PN Y P +P P  +H+  ++  E S ++ +
Sbjct: 220 LLKSYPNAYVPRLP-PKDDHDTYLNSSEDSTLSPL 253


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 167 IKMDENIHNNVAVLAILDSQPNLYKPNMP 253
           +K ++NIH+N   LAI ++  + +K + P
Sbjct: 22  LKFNKNIHSNPDFLAIAENWKSYWKSHYP 50


>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 90

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 520 VFIFFCECIYF 488
           +F FFC CIYF
Sbjct: 42  LFAFFCPCIYF 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,197
Number of Sequences: 5004
Number of extensions: 49122
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)