Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F08
         (649 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130007-1|AAI30008.1|  967|Homo sapiens zinc finger with KRAB a...    34   0.38 
BC104942-1|AAI04943.1|  167|Homo sapiens chromosome 14 open read...    30   8.2  
BC104940-1|AAI04941.1|  167|Homo sapiens chromosome 14 open read...    30   8.2  
AK090706-1|BAC03507.1|  167|Homo sapiens protein ( Homo sapiens ...    30   8.2  

>BC130007-1|AAI30008.1|  967|Homo sapiens zinc finger with KRAB and
           SCAN domains 2 protein.
          Length = 967

 Score = 34.3 bits (75), Expect = 0.38
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = +2

Query: 317 NXQNIIWTKNSTIMLLN-LYXTKIH-MLDNPKKKSKMWISIAEELKSLNVXVTADQVXWK 490
           N   + W    T   L+ L  T+ +  L    +KSK++ ++AE+L+      T +Q   K
Sbjct: 494 NLSGVHWGYEETKTFLDILRETRFYEALQACHRKSKLYGAVAEQLRECGFLRTPEQCRTK 553

Query: 491 INALTKKYKDCIDNGQXAVSFKYFNXMHQIL 583
             +L K Y+  + NG    S  ++  M  ++
Sbjct: 554 FKSLQKSYRK-VKNGHVLESCAFYKEMDALI 583


>BC104942-1|AAI04943.1|  167|Homo sapiens chromosome 14 open reading
           frame 83 protein.
          Length = 167

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = -2

Query: 558 YLKDTAXCPLSMQSLYFFVSAFIFHXT*SAVTXTFNDFNSSAIDIHIFDF-FLGLSNICI 382
           YL+    CPL ++ L + +  +++  T   +      FN+   D   FDF F+GL  +  
Sbjct: 64  YLRLRGRCPLLLRCLIYTLWTYLWEFTTGFI---LRQFNACPWDYSQFDFDFMGLITLEY 120

Query: 381 LVXYKFSNIIVEFFV 337
            V +    +I+E F+
Sbjct: 121 AVPWFCGALIMEQFI 135


>BC104940-1|AAI04941.1|  167|Homo sapiens chromosome 14 open reading
           frame 83 protein.
          Length = 167

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = -2

Query: 558 YLKDTAXCPLSMQSLYFFVSAFIFHXT*SAVTXTFNDFNSSAIDIHIFDF-FLGLSNICI 382
           YL+    CPL ++ L + +  +++  T   +      FN+   D   FDF F+GL  +  
Sbjct: 64  YLRLRGRCPLLLRCLIYTLWTYLWEFTTGFI---LRQFNACPWDYSQFDFDFMGLITLEY 120

Query: 381 LVXYKFSNIIVEFFV 337
            V +    +I+E F+
Sbjct: 121 AVPWFCGALIMEQFI 135


>AK090706-1|BAC03507.1|  167|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33387 fis, clone BRACE2006636. ).
          Length = 167

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = -2

Query: 558 YLKDTAXCPLSMQSLYFFVSAFIFHXT*SAVTXTFNDFNSSAIDIHIFDF-FLGLSNICI 382
           YL+    CPL ++ L + +  +++  T   +      FN+   D   FDF F+GL  +  
Sbjct: 64  YLRLRGRCPLLLRCLIYTLWTYLWEFTTGFI---LRQFNACPWDYSQFDFDFMGLITLEY 120

Query: 381 LVXYKFSNIIVEFFV 337
            V +    +I+E F+
Sbjct: 121 AVPWFCGALIMEQFI 135


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,161,574
Number of Sequences: 237096
Number of extensions: 1440958
Number of successful extensions: 2183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2183
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)