Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F06
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    27   2.4  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    26   5.5  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    25   7.2  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   7.2  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
 Frame = -3

Query: 545 CVPLRLRSRVCRWRANATARPRQDIGSIDVRPHGDPARSPXICVFFMRTGSPCS------ 384
           C   R  SRV  + AN  A+ +  +G+  +       + P +C+  ++ G P        
Sbjct: 33  CCYNRTTSRVDEFLANE-AKGKSIVGAHSLEEFVSKLKKPRVCILLVKAGKPVDYLIEGL 91

Query: 383 KDISKPGELIT*IPNQHTPPKT 318
             + + G++I    N H P  T
Sbjct: 92  APLLEKGDIIVDGGNSHYPDTT 113


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +1

Query: 328 GVCWLGIYVMSSPGLEMSLEHGLPVLMKXTQMXGDRAGSPCGLTSILPMSCRGRAVAFA 504
           G C  G   + S  LE++ E     + K  Q    + GS C L  +LP   + +  AFA
Sbjct: 47  GTCTSGKNCIFSHDLELATEK---TICKYFQKGNCKFGSKCALEHVLPDGRKVKTRAFA 102


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 502 ARHLQTRLRNLSGTQDEXCESSWLTRXNAQLNRPPTSP 615
           A    T +RNLS   +   +S+ +   NA +NR  +SP
Sbjct: 4   AHKRDTNVRNLSAPYNIPSQSARVAAGNAAINRRRSSP 41


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 402 PHEEXADXRRSRRITVRSDIDTADV 476
           P +E  D  + R ITV  DIDT ++
Sbjct: 514 PDKETFDLNQFRNITVGDDIDTTEL 538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,346
Number of Sequences: 5004
Number of extensions: 54049
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)