Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F06
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53333-9|AAA96162.1|  117|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam ...    27   8.8  
U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U53333-9|AAA96162.1|  117|Caenorhabditis elegans Hypothetical
           protein F36A4.3 protein.
          Length = 117

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -3

Query: 512 RWRANATARPRQDIG-SIDVRPHGDPAR 432
           +W      R  Q +G  ID RPHG P+R
Sbjct: 83  KWSKKVNGRVGQSVGFDIDARPHGKPSR 110


>U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam
           protein 1, isoform a protein.
          Length = 1147

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 276 LSGTRSGARTKSVCGFRRRVLVGYLCDEFPWLGDVLGARASRPHEE 413
           LS   S AR +SV   + R ++     ++ W G +L    +RP  E
Sbjct: 54  LSAGYSEARMQSVVWLKDREIISINDTDYTWKGFILTIHGTRPQNE 99


>U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical
           protein T22F7.3 protein.
          Length = 988

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +1

Query: 448 CGLTSILPMSCRGRAVAFARHLQTRLRNLSGTQDEXCESSWLTRXNAQLNR 600
           CG TS+    C     AF   L   +R  +      C S +L R NAQ NR
Sbjct: 763 CGSTSM--DVCPSEERAFINSLDETVRECAINVPGSCPSDFLCRFNAQRNR 811


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,480,927
Number of Sequences: 27780
Number of extensions: 333247
Number of successful extensions: 745
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)