Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F06
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 408 HEDGKPVLQGHLQARGTHHINTQPA 334
           H+    ++ GH Q+    HIN+ P+
Sbjct: 796 HQHAAQMIYGHQQSHHGLHINSSPS 820


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 333 VLVGYLCDEFPWLGDVLG 386
           V V YL  E+PW   VLG
Sbjct: 515 VPVKYLTYEYPWWSHVLG 532


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 333 VLVGYLCDEFPWLGDVLG 386
           V V YL  E+PW   VLG
Sbjct: 568 VPVKYLTYEYPWWSHVLG 585


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 216 RKHFKITVHSVPTC*INVYLKKKGFLISNEGGNKK 112
           R +F   VHS     +N++L KKGF +     N K
Sbjct: 184 RINFGSWVHSGEE--VNIFLDKKGFHMDGYTNNSK 216


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +3

Query: 270 TLLSGTRSGARTKSVCGFRRRVLVGYLCDEFPWLGDVLGARASRP 404
           TL SGTRS     +    R        CD  P   + +G+R   P
Sbjct: 52  TLYSGTRSSESLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHP 96


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 270 TLLSGTRSGARTKSVCG 320
           T   G   G RT++VCG
Sbjct: 617 TFQEGLSEGMRTRTVCG 633


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 584  TLNSTDHQPPRDNATTTLST 643
            T      QPP D   TTL++
Sbjct: 1076 TAEGVPEQPPHDTTCTTLTS 1095


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,329
Number of Sequences: 438
Number of extensions: 4333
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)