Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_F05
(638 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 258 3e-69
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 146 2e-35
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1) 29 2.4
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 5.6
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 27 9.7
SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014) 27 9.7
SB_13736| Best HMM Match : PHD (HMM E-Value=0.001) 27 9.7
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 27 9.7
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24) 27 9.7
SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001) 27 9.7
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 258 bits (632), Expect = 3e-69
Identities = 121/199 (60%), Positives = 145/199 (72%)
Frame = +2
Query: 32 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXX 211
++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY TG
Sbjct: 95 RIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGT 154
Query: 212 XXXXXXEYNVEPVDNGPXAFTCYLDVGLXRTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 391
EYNVE VD P AF C+LDVGL RT+TGARVFGA+KGAVDGGL +PHS+KRFPG
Sbjct: 155 DDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPHSMKRFPG 214
Query: 392 YDAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDSFKRQFXKYIKLGVTAXAIEAIYXK 571
YD+ESK F+AEVHR HIFG HVAEYM SL ++DE+S+KRQF YIK GV A +IE IY
Sbjct: 215 YDSESKDFSAEVHRNHIFGKHVAEYMRSLAEEDEESYKRQFSAYIKNGVDADSIEGIYKA 274
Query: 572 AHEAIRADXSHKKKELKKD 628
AH+AIRAD HKK E KKD
Sbjct: 275 AHQAIRADPVHKKAE-KKD 292
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 146 bits (353), Expect = 2e-35
Identities = 66/112 (58%), Positives = 77/112 (68%)
Frame = +2
Query: 35 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 214
+AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG
Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60
Query: 215 XXXXXEYNVEPVDNGPXAFTCYLDVGLXRTTTGARVFGAMKGAVDGGLNVPH 370
EYNVE +D P AF C+LDVGL RT+TGARVFGA+KGAVDGGL +PH
Sbjct: 61 EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112
>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
Length = 298
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 395 DAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDSFKRQFXKYIK 529
D+ K+ NAE+ RA +++ + S D+E + R+F + K
Sbjct: 157 DSSVKRGNAEIRRARFRATTISQVVQSFRSDEERNSVRKFIAHYK 201
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 44 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 142
++ GDH+ A+YSH ++ R+ V + L AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 405 DSAS*PGNLLME*GTLRPPSTAPFIAPKTRAPV 307
D+ P +M T+RPP T F+ T+APV
Sbjct: 1653 DTTVAPETTVMPDTTMRPPKTDVFVTEATKAPV 1685
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 70 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 186
V+C + +C+ W CCSI N S + +S +W
Sbjct: 91 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 129
>SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)
Length = 598
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 70 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 186
V+C + +C+ W CCSI N S + +S +W
Sbjct: 104 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 142
>SB_13736| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 226
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 70 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 186
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 70 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 186
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 70 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 186
V+C + +C+ W CCSI N S + +S +W
Sbjct: 359 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 397
>SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24)
Length = 830
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 70 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 186
V+C + +C+ W CCSI N S + +S +W
Sbjct: 645 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 683
>SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 70 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 186
V+C + +C+ W CCSI N S + +S +W
Sbjct: 184 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 222
>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 560
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 70 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 186
V+C + +C+ W CCSI N S + +S +W
Sbjct: 23 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,652,500
Number of Sequences: 59808
Number of extensions: 360524
Number of successful extensions: 882
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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