Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F05
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   198   2e-51
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   195   2e-50
At5g10500.1 68418.m01216 kinase interacting family protein simil...    28   6.0  

>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  198 bits (484), Expect = 2e-51
 Identities = 96/204 (47%), Positives = 129/204 (63%)
 Frame = +2

Query: 5   RLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXX 184
           R +NKD+  Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY TG           
Sbjct: 54  RFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKML 113

Query: 185 XXXXXXXXXXXXXXXEYNVEPVDNGPXAFTCYLDVGLXRTTTGARVFGAMKGAVDGGLNV 364
                          +++VEP D+    F   LDVGL RTTTG RVFGA+KGA+DGGL++
Sbjct: 114 EMDDEYEGNVEATGEDFSVEPTDSR-RPFRALLDVGLIRTTTGNRVFGALKGALDGGLDI 172

Query: 365 PHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDSFKRQFXKYIKLGVTA 544
           PHS KRF G+  E+K+ +AE+HR +I+G HV+ YM  L +D+ +  +  F  YIK GV A
Sbjct: 173 PHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEA 232

Query: 545 XAIEAIYXKAHEAIRADXSHKKKE 616
            +IE +Y K H AIRA+ +HKK E
Sbjct: 233 ESIEEMYKKVHAAIRAEPNHKKTE 256


>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  195 bits (475), Expect = 2e-50
 Identities = 95/202 (47%), Positives = 127/202 (62%)
 Frame = +2

Query: 5   RLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXX 184
           R +NKD+  Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY TG           
Sbjct: 54  RFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKML 113

Query: 185 XXXXXXXXXXXXXXXEYNVEPVDNGPXAFTCYLDVGLXRTTTGARVFGAMKGAVDGGLNV 364
                          +++VEP D+    F   LDVGL RTTTG RVFGA+KGA+DGGL++
Sbjct: 114 EMDDEYEGNVEATGEDFSVEPTDSR-RPFRALLDVGLIRTTTGNRVFGALKGALDGGLDI 172

Query: 365 PHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMXSLEQDDEDSFKRQFXKYIKLGVTA 544
           PHS KRF G+  E+K+ +AE+HR +I+G HV+ YM  L +D+ +  +  F  YIK GV A
Sbjct: 173 PHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEA 232

Query: 545 XAIEAIYXKAHEAIRADXSHKK 610
            +IE +Y K H AIRAD + KK
Sbjct: 233 ESIEELYKKVHAAIRADPNPKK 254


>At5g10500.1 68418.m01216 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 848

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 461 EYMXSLEQDDEDSFKRQFXKYIKLGVTAXAIEAIYXKAHEAIRADXSHKKKELK 622
           EY   L +D+ DSF ++   Y K      +      KA+ A+     H  KEL+
Sbjct: 38  EYALKLLEDEGDSFAKRAEMYYKRRPELISFVEESFKAYRALAERYDHISKELQ 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,762,797
Number of Sequences: 28952
Number of extensions: 232435
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)