Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F04
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    54   2e-08
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.0  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    27   1.8  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.4  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   7.1  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   9.4  

>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 27/65 (41%), Positives = 37/65 (56%)
 Frame = +3

Query: 384 RIDIIHSNVIWQRKYXWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGV 563
           R DI+H  VI++        A +K R E+   G+K + QKG G AR G   SP+ RGG  
Sbjct: 34  RRDILHRAVIYEADNDRQGTASSKRRNEITCSGRKLYRQKGTGHARVGDASSPIRRGGAK 93

Query: 564 AHGPR 578
           +HGP+
Sbjct: 94  SHGPK 98


>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 249

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 8   IVLSMTXRNQTK*PINFNKKIKYRNVLKHFLVVCIINKKFLKHGFYTN*C 157
           ++LS+T  ++   P  FN++I     LK  +  C ++    KH  + + C
Sbjct: 63  LLLSITNADKPVAPAAFNERILMMEKLKTLIHNCTVSVAICKHALFVDKC 112


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 177 SPQIRLCSLNSAAVTTTTANKTINILKKEW 266
           S  IRLC + S + T + +  T N+L  +W
Sbjct: 168 SSSIRLCDMQSGSYTHSLSGHTGNVLAVDW 197


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 405 CCGLCRS*VEPHKPWDVIRLSRVFFLVHCPNXRSKPLWVWC 283
           C GLC     P   W  +++++    V CP  R  PL++ C
Sbjct: 387 CAGLCT----PFIYWHYLKVNKKRNGVICPEDRLYPLFIGC 423


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -3

Query: 340 SFFSCTLSKXSIQTSLGLVYSGGNSHSFFKMLIVLFAVVVVTAAEFNEH--KRI*GDTCS 167
           +FFS   S       L   Y+G +S++ F + I+LF  V   A  +  H  KR+   +  
Sbjct: 640 AFFSLGNSNSLATVDLSQAYTGLDSYNIFAVGILLFTSVFAGALWWCLHQPKRMMDRSVK 699

Query: 166 LFIALISIEAMF 131
            F  + SI   F
Sbjct: 700 TFWIMSSISLTF 711


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 547 NRGDLIEPCLARPNPFCGHGFLPPPRTSA 461
           NR D ++P L RP  F    + P P   A
Sbjct: 415 NRPDAVDPALRRPGRFDREFYFPLPDRDA 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,668
Number of Sequences: 5004
Number of extensions: 66167
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)