Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_F04
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 73 2e-13
03_02_0470 + 8723772-8724705,8724900-8724971,8725315-8725376 68 6e-12
12_02_0377 + 18342631-18342675,18343654-18343771,18344233-183443... 58 5e-09
10_06_0020 - 9693126-9693437,9694940-9695368 35 0.048
05_01_0184 - 1298640-1298751,1298936-1299027,1299695-1299910,130... 29 2.4
05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107 29 2.4
02_05_0879 - 32444967-32445250,32445643-32445674,32445752-324458... 29 2.4
11_04_0272 - 15631598-15631898,15633162-15633291,15636394-156365... 29 4.2
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 4.2
12_02_0493 - 19677481-19677776,19678953-19679017,19679455-196795... 28 5.6
02_05_1123 + 34275272-34275331,34275451-34275523,34275631-342757... 28 5.6
02_01_0120 + 884467-887649 28 5.6
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 28 7.4
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 72.9 bits (171), Expect = 2e-13
Identities = 44/102 (43%), Positives = 55/102 (53%)
Frame = +3
Query: 342 GLIELHPMVYAAPPRIDIIHSNVIWQRKYXWVSWAHTKTRAEVRGGGKKPWPQKGLGRAR 521
G + L V+ P R DI+H V TKT +EV G G+KP+ QKG GRAR
Sbjct: 152 GFMVLDGDVFDVPIRKDIVHR----------VGTHSTKTISEVSGTGRKPYNQKGTGRAR 201
Query: 522 HGSIRSPLFRGGGVAHGPRSGKSHFFMLPFHLRLHGLTTTLS 647
HG++R P FRGG HGP+ +SH L +R GL LS
Sbjct: 202 HGTLRGPQFRGGATMHGPKP-RSHAIKLQKKVRRLGLKIALS 242
>03_02_0470 + 8723772-8724705,8724900-8724971,8725315-8725376
Length = 355
Score = 68.1 bits (159), Expect = 6e-12
Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Frame = +3
Query: 333 KKLGLIELHPMVYAAPPRID--IIHSNVIWQRKYXWVSWAHTKTRAEVRGGGKKPWPQKG 506
+K+G + L + +APP ++H +I R+ A T TR EVRGGG+KP+ QK
Sbjct: 75 EKVGEVALD--LKSAPPSTARAVVHRAIITDRQNKRRGTASTLTRGEVRGGGRKPYQQKK 132
Query: 507 LGRARHGSIRSPLFRGGGVAHGPR 578
G+AR GS+R+PL GGGV GP+
Sbjct: 133 TGKARRGSMRTPLRPGGGVIFGPK 156
>12_02_0377 +
18342631-18342675,18343654-18343771,18344233-18344380,
18345142-18345220,18345330-18345449,18346112-18346285,
18346424-18346525
Length = 261
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = +3
Query: 486 KPWPQKGLGRARHGSIRSPLFRGGGVAHGPRSGKSHFFMLPFHLRLHGLTTTLS 647
KP+ QKG GRARHG++R P FRGG HGP+ +SH L +R GL LS
Sbjct: 111 KPYKQKGTGRARHGTLRGPQFRGGATMHGPKP-RSHAIKLQKKVRRLGLKIALS 163
>10_06_0020 - 9693126-9693437,9694940-9695368
Length = 246
Score = 35.1 bits (77), Expect = 0.048
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 464 RSSGWRQETVATERVGSRQTWLNKITPISWWRCSPWSSLRQIALLYATI 610
RS GW R G+R +W + SWW W S R + A +
Sbjct: 92 RSGGWPAGDGGPTRGGARGSWRRRRRSCSWWSSQQWCSRRHLETAAAVV 140
>05_01_0184 -
1298640-1298751,1298936-1299027,1299695-1299910,
1300045-1300614
Length = 329
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -3
Query: 583 PERGPWATPPPRNRGDLIEPCLAR--PNPFCGHGFLPPPRTSAL 458
P+ PWA PP L +P + P+P G LPP + S L
Sbjct: 91 PKASPWAGSPPGAATHLQQPSRMKLSPSPAPGAQHLPPAKPSPL 134
>05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107
Length = 662
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -3
Query: 583 PERGPWATPPPRNRGDLIEPCLAR--PNPFCGHGFLPPPRTSAL 458
P+ PWA PP L +P + P+P G LPP + S L
Sbjct: 91 PKASPWAGSPPGAATHLQQPSRMKLSPSPAPGAQHLPPAKPSPL 134
>02_05_0879 -
32444967-32445250,32445643-32445674,32445752-32445809,
32445840-32445913,32446004-32446088,32447054-32447735
Length = 404
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -3
Query: 607 GSIKKCDLPERGPWATPPPR--NRGDLIEPCLARPNPFCGHGFLPPPRTSA 461
G +C P + P T PP N P L+ P P G +PPP + +
Sbjct: 304 GLQSRCPGPHQFPELTEPPTTVNHDSTFLPPLSAPGPAEAGGAIPPPNSGS 354
>11_04_0272 -
15631598-15631898,15633162-15633291,15636394-15636544,
15636632-15636730,15636912-15637063,15637079-15637301
Length = 351
Score = 28.7 bits (61), Expect = 4.2
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 2/132 (1%)
Frame = +3
Query: 204 NSAAVTTTTANKTINILKKEWEFPPLYTKPREVWIXNLDSVQEKKLGLIELHPMVYAAPP 383
N+ T N+TI LK +W YT W D +Q KKL + P YA+
Sbjct: 204 NTVVTDLKTRNQTIRFLKVQWSH---YTMDEATW-EKEDDLQ-KKLASVFPSPR-YASQG 257
Query: 384 RIDIIHSNVIWQRKYXWVSWAHTKTRAEVRGGGK-KPWPQKGLGRARHGSIRSPL-FRGG 557
R + S + R Y ++GGG W + G G+ G +GG
Sbjct: 258 R-GGVPSCGSYSRGYGRRRLECGSGIGALQGGGDGGGWKRFGCGKGIRGMQGGGCDAQGG 316
Query: 558 GVAHGPRSGKSH 593
G A G +G+ +
Sbjct: 317 GGARGSDAGRDN 328
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -3
Query: 601 IKKCDLPERGPWATPPPRNRGDLIEPCLARPNPFCGHGFLPPP 473
+ C +P P PPP + P P P H LPPP
Sbjct: 594 LPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPNHSVLPPP 636
>12_02_0493 -
19677481-19677776,19678953-19679017,19679455-19679594,
19680723-19680801,19683476-19683675
Length = 259
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 571 PWATPPPRNRGDLIEPCLARPNPFCGHG 488
PW TP NRG + PC + + HG
Sbjct: 193 PWQTPESNNRGAGVSPCCSPIDALPFHG 220
>02_05_1123 +
34275272-34275331,34275451-34275523,34275631-34275728,
34276012-34276153,34276261-34276361,34276633-34276716,
34276949-34277014,34277102-34277167,34277324-34277404,
34277489-34277566,34277687-34277848,34277936-34278011,
34278111-34278223,34278323-34278751
Length = 542
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = -3
Query: 571 PWATPPPRNRGDLIEPCLARPNPFCGHGFLPPPRTSALVLVCAQETHXYFL 419
PW P + G +++ + NPF + PP + + Q+ H + L
Sbjct: 428 PWEAAAPASSGPMMQQPMQ--NPFYASNAIAPPLNVQMAAMAQQQQHMFML 476
>02_01_0120 + 884467-887649
Length = 1060
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 441 WAHTKTRAEVRGGGKKPWPQK 503
W H RA+V GGG PWP +
Sbjct: 860 WLHE--RADVEGGGALPWPAR 878
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -3
Query: 583 PERGPWATPPPRNRGDLIEPCLARPNPFCGHGFLPPPRTS 464
P+R + P RNRG A P P PPPR +
Sbjct: 31 PDRSSYVPPHLRNRGASSGGGAAAPPPSSSSSSAPPPRAA 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,731,088
Number of Sequences: 37544
Number of extensions: 486625
Number of successful extensions: 1327
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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