Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_F04
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15339| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_29696| Best HMM Match : Herpes_US9 (HMM E-Value=0.56) 29 4.3
SB_22242| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 28 5.7
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 28 5.7
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 28 5.7
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 27 9.9
SB_53284| Best HMM Match : DUF1279 (HMM E-Value=1.5) 27 9.9
SB_9363| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5) 27 9.9
>SB_15339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = -3
Query: 577 RGPWATPPPRNRGDLIEPCLARPNPFCGHG-----FLPPPRTSA 461
RG PPP N DL+ PC+ N C G PPPR S+
Sbjct: 69 RGCIVPPPPPNIWDLLRPCIVTSNS-CSPGDPLVLERPPPRWSS 111
>SB_29696| Best HMM Match : Herpes_US9 (HMM E-Value=0.56)
Length = 632
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = +3
Query: 513 RARHGSIRSPLFRGGGVAHGPRSGKSHFFMLPFHLRLHGLTTTLS 647
R H R P GG V RSG SH P H + T++
Sbjct: 317 RRGHRECRQPRLEGGVVTFFARSGGSHAMRSPGHHTAESIVETIN 361
>SB_22242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 74 YRNVLKHFLVVCIINKKFLKHGFYTN*CYKKATCISSNPLMFVEFS 211
YR+++ L C +KF G ++ CY +C+ S+ L VE S
Sbjct: 540 YRSLISGQLCFCCRKRKFSLFGEWSRPCYICESCVCSHCLHKVETS 585
>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
Length = 1866
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +2
Query: 389 RHNPQQRYMAKKIXMGFLGTYQDESRSSGWRQ----ETVATERVGSRQTWLNKI 538
+HN Q + +K + +QD+S G R+ ETVA ER + +WL +
Sbjct: 264 KHNKHQAPLERKASLPSYIAFQDKSSDDGHRKIPLPETVAEER-SRKGSWLRSL 316
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 407 VAVDYVDPRWSRINHGM*FD*AEFFF 330
VA Y +P+WS ++H M ++ A FF
Sbjct: 1130 VAHPYFEPQWSSLHHAMTYNGAPHFF 1155
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = -1
Query: 591 AICLSEDHGLHLHHEIGVILLSHVWRDPTLSVATV----SCL--HPELLLSSWY 448
A CL + + G+++ +H +RDPT+++AT+ SCL E+L S Y
Sbjct: 196 ASCLIMTTEILRNASTGIVMSNHDYRDPTVTIATLVPEASCLIMTTEILRSMLY 249
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = +3
Query: 468 VRGGGKKPWPQKGLGRARHGSIRSP-----LFRGGGVAHGPRSG 584
++GGG P G GR + G R P +GGG+ GP G
Sbjct: 295 MQGGGMGRGPGGGWGRMQGGMGRGPGGGWGRMQGGGMGRGPGGG 338
>SB_53284| Best HMM Match : DUF1279 (HMM E-Value=1.5)
Length = 427
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +3
Query: 444 AHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGVAHGPRSGKSH 593
AH+ +R+ V G + + R H R P GG V RSG SH
Sbjct: 265 AHS-SRSRVLGSSNAKQSSEQVIRRGHRECRQPRLEGGVVTFFARSGGSH 313
>SB_9363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +3
Query: 465 EVRGGGKKPWPQKGLGR----ARHGSIRSPLFRGGGVAHGP 575
++RG G P KG+ HG ++ RG G +HGP
Sbjct: 114 DIRGYGTSHAPVKGIDLRGFGTSHGPVKEIELRGFGTSHGP 154
>SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5)
Length = 554
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 452 QDESRSSGWRQETVATERVGSRQTWLNKITPISWWRCS--PWSSL 580
++++ +S WR + V+TE + SR + N + +CS PW L
Sbjct: 183 REKATTSVWRDQVVSTETLTSRGIYDNNMQISKDDKCSWNPWDEL 227
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,165,177
Number of Sequences: 59808
Number of extensions: 518952
Number of successful extensions: 1249
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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