Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_F04
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022982-7|AAB69933.1| 299|Caenorhabditis elegans Hypothetical ... 140 8e-34
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 30 1.2
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 30 1.2
Z68215-1|CAA92450.1| 517|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF043697-4|AAO38636.1| 431|Caenorhabditis elegans Hypothetical ... 29 2.1
AF043697-3|AAB97558.1| 548|Caenorhabditis elegans Hypothetical ... 29 2.1
U64844-8|AAB18308.1| 330|Caenorhabditis elegans Serpentine rece... 29 2.8
Z81130-6|CAB03419.4| 312|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z54270-3|CAA91027.2| 560|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z48009-6|CAA88079.1| 329|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 6.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 6.6
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 28 6.6
AC006729-7|AAF60463.1| 157|Caenorhabditis elegans Hypothetical ... 27 8.7
>AF022982-7|AAB69933.1| 299|Caenorhabditis elegans Hypothetical
protein T23B12.2 protein.
Length = 299
Score = 140 bits (339), Expect = 8e-34
Identities = 63/145 (43%), Positives = 96/145 (66%), Gaps = 1/145 (0%)
Frame = +3
Query: 216 VTTTTANKTINILKKEWEFPPL-YTKPREVWIXNLDSVQEKKLGLIELHPMVYAAPPRID 392
V++T++ ++I+ ++ W P + K + W+ NLD+++++KLGL++LHP ++ PRID
Sbjct: 22 VSSTSSGESIDTRRELWRKPENPFIKTPQAWVSNLDTIEDEKLGLVDLHPDIFRTSPRID 81
Query: 393 IIHSNVIWQRKYXWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGVAHG 572
I+H N+ WQ Y V T+AE+ GGG+KPWPQK GRA GSIRSP F GG A+G
Sbjct: 82 ILHRNLTWQSVYRNVQMTKMLTKAEMPGGGRKPWPQKKTGRAHVGSIRSPQFIRGGFANG 141
Query: 573 PRSGKSHFFMLPFHLRLHGLTTTLS 647
R ++ F+MLP +R+ GL L+
Sbjct: 142 VRGPRTWFYMLPDAVRIQGLCVALT 166
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = -3
Query: 583 PERGPWATPPPRNRGDLIEPCLARPNPFCG----HGFLPPP 473
P RG + PPP G + P P P G GF+PPP
Sbjct: 299 PPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPP 339
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = -3
Query: 583 PERGPWATPPPRNRGDLIEPCLARPNPFCG----HGFLPPP 473
P RG + PPP G + P P P G GF+PPP
Sbjct: 299 PPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPP 339
>Z68215-1|CAA92450.1| 517|Caenorhabditis elegans Hypothetical
protein C53B4.1 protein.
Length = 517
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 549 EIGVILLSHVWRDPTLSVATVSCLHPELLLSSWYVPRKPXYI 424
++G+ +S W+ T A VSCL +L+ Y+P P ++
Sbjct: 216 QVGLAYISQEWKTATYICAAVSCLSLPILI---YLPESPIWL 254
>AF043697-4|AAO38636.1| 431|Caenorhabditis elegans Hypothetical
protein F56C11.6b protein.
Length = 431
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 329 LYTVQIXDPNLSGFGVQRWKLPFL 258
+Y Q N +GFGV RW LPFL
Sbjct: 306 VYFYQFDYHNSAGFGVFRWLLPFL 329
>AF043697-3|AAB97558.1| 548|Caenorhabditis elegans Hypothetical
protein F56C11.6a protein.
Length = 548
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 329 LYTVQIXDPNLSGFGVQRWKLPFL 258
+Y Q N +GFGV RW LPFL
Sbjct: 423 VYFYQFDYHNSAGFGVFRWLLPFL 446
>U64844-8|AAB18308.1| 330|Caenorhabditis elegans Serpentine
receptor, class h protein213 protein.
Length = 330
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 132 FKNFLLIIHTTRKCFRTFRYFIFLLKFI 49
F+N LLI+ T KC+R FR F+ FI
Sbjct: 119 FENRLLILIPTSKCWRVFRTPWFITHFI 146
>Z81130-6|CAB03419.4| 312|Caenorhabditis elegans Hypothetical
protein T23G11.7b protein.
Length = 312
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 589 DLPERGPWATPPPRNRGDLIEPCLARPNPFCGHGFLP 479
+LP P++ PPPRN+ E + P P G +P
Sbjct: 236 NLPSHTPFSAPPPRNQPQQYED-FSTPQPVAPPGSVP 271
>Z54270-3|CAA91027.2| 560|Caenorhabditis elegans Hypothetical
protein F11C1.3 protein.
Length = 560
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 497 TERVGSRQTWLNKITPISWWRCSPWSSLR 583
T+ VG +TW N +T + WW+ S LR
Sbjct: 246 TDYVGQIKTW-NGLTHLPWWKTEDTSDLR 273
>Z48009-6|CAA88079.1| 329|Caenorhabditis elegans Hypothetical
protein AH6.8 protein.
Length = 329
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 138 PCFKNFLLIIHTTRKCFRTFRYFIFLLKF-IGYFV 37
P F+ +I T+ CF TF FIF L + +G+F+
Sbjct: 224 PRFRKREVIDSTSTICFLTFVQFIFFLVYSLGFFI 258
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -3
Query: 583 PERGPWATPPPRNRGDLIEPCLARPNPFCGHGFLPPP 473
P GP PPP P P P GHG +PPP
Sbjct: 356 PSAGPGMYPPP--------PPSRPPAPPSGHGMIPPP 384
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -3
Query: 583 PERGPWATPPPRNRGDLIEPCLARPNPFCGHGFLPPP 473
P GP PPP P P P GHG +PPP
Sbjct: 366 PSAGPGMYPPP--------PPSRPPAPPSGHGMIPPP 394
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 135 MASILINAIKRLHVSPQIRLCSLNSAAVTTTTANKTINILKKE 263
M I + K HV+P+ +L ++ +++ T K +N +KKE
Sbjct: 196 MDPISMGRAKNAHVAPRKKLENVPASSETDKVVEKAVNPIKKE 238
>AC006729-7|AAF60463.1| 157|Caenorhabditis elegans Hypothetical
protein Y24D9A.6 protein.
Length = 157
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 77 RNVLKHFLVVCIINKKFLKHGFYTN*CYKKAT 172
RNVL L VC+ KK K G Y C+ K T
Sbjct: 97 RNVLDRCLCVCLERKKKKKKGIY---CHHKTT 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,470,135
Number of Sequences: 27780
Number of extensions: 387873
Number of successful extensions: 1048
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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