Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F04
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 378 PPRIDIIHSNVIWQRKYXWV 437
           P R +IIH   I   KY WV
Sbjct: 537 PARYNIIHFKQIEPGKYEWV 556


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 256 KRNGSFHRCTPNPERFGSXIWTV 324
           + N S H+C    E     +WTV
Sbjct: 553 RHNLSLHKCFMRVENVKGAVWTV 575


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 392 HNPQQRYMAKKIXMGFLGTYQDESRSSGWRQETVA 496
           H    R  AKK+ +  L + QD+ RS+  R   VA
Sbjct: 250 HEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVA 284


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 392 HNPQQRYMAKKIXMGFLGTYQDESRSSGWRQETVA 496
           H    R  AKK+ +  L + QD+ RS+  R   VA
Sbjct: 250 HEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVA 284


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 135 CFKNFLLIIHTTRKC 91
           C  NFL+  H T++C
Sbjct: 163 CAMNFLIYPHDTQEC 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,988
Number of Sequences: 438
Number of extensions: 4726
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)