Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F04
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20060.1 68415.m02344 ribosomal protein L4 family protein con...    90   1e-18
At1g07320.2 68414.m00780 50S ribosomal protein L4, chloroplast (...    60   9e-10
At1g07320.1 68414.m00779 50S ribosomal protein L4, chloroplast (...    60   9e-10
At3g16290.1 68416.m02056 FtsH protease, putative contains simila...    30   1.5  
At5g05940.1 68418.m00657 expressed protein contains Pfam profile...    28   4.7  
At5g44190.1 68418.m05407 myb family transcription factor (GLK2) ...    27   8.1  

>At2g20060.1 68415.m02344 ribosomal protein L4 family protein
           contains Pfam profile PF00573: ribosomal protein L4/L1
           family
          Length = 300

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 48/107 (44%), Positives = 62/107 (57%)
 Frame = +3

Query: 327 QEKKLGLIELHPMVYAAPPRIDIIHSNVIWQRKYXWVSWAHTKTRAEVRGGGKKPWPQKG 506
           Q ++ G + L   V+  P R DIIH+ V WQ          TKT +EV G G+KPW QKG
Sbjct: 97  QNEEKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRKPWNQKG 156

Query: 507 LGRARHGSIRSPLFRGGGVAHGPRSGKSHFFMLPFHLRLHGLTTTLS 647
            GRARHG++R P FRGG V HGP+  +SH   +   +R  GL   L+
Sbjct: 157 TGRARHGTLRGPQFRGGCVMHGPKP-RSHAIKMNKQVRRLGLKIALT 202


>At1g07320.2 68414.m00780 50S ribosomal protein L4, chloroplast
           (CL4) identical to SP:O50061 from [Arabidopsis thaliana]
          Length = 280

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 30/62 (48%), Positives = 36/62 (58%)
 Frame = +3

Query: 393 IIHSNVIWQRKYXWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGVAHG 572
           ++H  ++          A T TR EVRGGG KP+ QK  G AR GS R+PL  GGGV  G
Sbjct: 82  VVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFG 141

Query: 573 PR 578
           PR
Sbjct: 142 PR 143


>At1g07320.1 68414.m00779 50S ribosomal protein L4, chloroplast
           (CL4) identical to SP:O50061 from [Arabidopsis thaliana]
          Length = 282

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 30/62 (48%), Positives = 36/62 (58%)
 Frame = +3

Query: 393 IIHSNVIWQRKYXWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGVAHG 572
           ++H  ++          A T TR EVRGGG KP+ QK  G AR GS R+PL  GGGV  G
Sbjct: 82  VVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFG 141

Query: 573 PR 578
           PR
Sbjct: 142 PR 143


>At3g16290.1 68416.m02056 FtsH protease, putative contains
           similarity to cell division protein FtsH GI:1652085 from
           [Synechocystis sp. PCC 6803]
          Length = 876

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 577 RGPWATPPPRNRGDLIEPCLARPNPFCGHGFLPPP 473
           RG   T    NR D+++P L RP  F    F+P P
Sbjct: 546 RGEVITIASTNRPDILDPALVRPGRFDRKIFIPKP 580


>At5g05940.1 68418.m00657 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 611

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/56 (21%), Positives = 24/56 (42%)
 Frame = +3

Query: 213 AVTTTTANKTINILKKEWEFPPLYTKPREVWIXNLDSVQEKKLGLIELHPMVYAAP 380
           A++    N    I  + W   PL ++ +E+W   ++ +      ++EL P     P
Sbjct: 131 AISNAITNLCATIFGQLWRLEPLSSEKKEMWRREMEWILSVSDHIVELTPSTQTYP 186


>At5g44190.1 68418.m05407 myb family transcription factor (GLK2)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 386

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 468 VRGGGKKPWPQKGLGRARH 524
           V GGGKKPW    LG   H
Sbjct: 228 VGGGGKKPWTAPALGYPPH 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,683,053
Number of Sequences: 28952
Number of extensions: 367827
Number of successful extensions: 878
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)