Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E23
         (491 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    30   0.010
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    29   0.023
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   6.1  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   6.1  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   8.0  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   8.0  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   8.0  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   8.0  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 30.3 bits (65), Expect = 0.010
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = -3

Query: 345 VHNLTVRGAPSXLH*STRVYQVGQNHPSRTTXLFPPAGCLLTKSTALLTSNSDFENPVKM 166
           +HNL+    P  +  + +  QV +N P  T    PPA    T S++ L S     NP   
Sbjct: 181 MHNLSSVPQPQPVLPTYKWMQVKRNVPKPTVPKIPPAEFPTTSSSSALES----PNPASR 236

Query: 165 SSNGGSAISFLFTL 124
           SS  GS  S + +L
Sbjct: 237 SSCLGSNTSSMLSL 250


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 29.1 bits (62), Expect = 0.023
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = -3

Query: 345 VHNLTVRGAPSXLH*STRVYQVGQNHPSRTTXLFPPAGCLLTKSTALLTSNSDFENPVKM 166
           +HNL+    P  +  + +  QV +N P  T    PPA    T S++ L S         +
Sbjct: 181 MHNLSSVPQPQPVLPTYKWMQVKRNVPKPTVPKIPPAEFPTTSSSSALESPDPASRSSCL 240

Query: 165 SSNGGSAIS 139
            SN  S +S
Sbjct: 241 GSNTSSMLS 249


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 285 QVGQNHPSRTTXLFPPAGCLLTKSTALLTSNSDFENPVKMSSNGGSA 145
           Q+ +N   +     P    LLT+  A  T  + +EN  +  +N  SA
Sbjct: 110 QLDENKLDKKNDDSPALRALLTRPQAKKTPPNQYENFQQYDNNNFSA 156


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 285 QVGQNHPSRTTXLFPPAGCLLTKSTALLTSNSDFENPVKMSSNGGSA 145
           Q+ +N   +     P    LLT+  A  T  + +EN  +  +N  SA
Sbjct: 110 QLDENKLDKKNDDSPALRALLTRPQAKKTPPNQYENFQQYDNNNFSA 156


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 246 FPPAGCLLTKSTALLTSNSDFENP 175
           F P G LLT + A + +++ ++ P
Sbjct: 164 FRPGGYLLTVAVAAIPTDAAYDVP 187


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 277 TESSFKNNXSLSTSRLSFNQINSSFN 200
           TESS++ N         +NQ  S++N
Sbjct: 200 TESSYQFNDPQFNFNYQYNQAYSNYN 225


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 277 TESSFKNNXSLSTSRLSFNQINSSFN 200
           TESS++ N         +NQ  S++N
Sbjct: 220 TESSYQFNDPQFNFNYQYNQAYSNYN 245


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 285 QVGQNHPSRTTXLFPPAGCLLTKSTALLTSNSDFENPVKMSSNGGSA 145
           Q+ +N   +     P    LLT+  A  T  + +EN  +  +N  SA
Sbjct: 110 QLDENKLDKKDDDSPALRALLTRPQAKKTPPNQYENFQQYDNNNFSA 156


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,981
Number of Sequences: 336
Number of extensions: 1822
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11525470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)