Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_E23
(491 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces... 59 3e-10
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 2.7
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces... 25 4.7
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 25 4.7
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 25 4.7
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 6.2
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c... 25 6.2
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 25 8.2
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 8.2
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc... 25 8.2
>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 113
Score = 59.3 bits (137), Expect = 3e-10
Identities = 23/48 (47%), Positives = 38/48 (79%)
Frame = +3
Query: 246 REXLFLKDDSVRPGILVLINEEXWELHGQLNYELKENDKIMFISTLHG 389
++ LF+ + +VRPGI+VL+N++ WEL + Y L+E D+++F+STLHG
Sbjct: 49 QKDLFILNGTVRPGIIVLVNDQDWELLEKEEYNLEEGDEVVFVSTLHG 96
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 2.7
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = -2
Query: 388 PCNVDMNMILSFSLSS*FNCPWSSQXS-----SLINTSIPGRTESSFKNNXSLSTSRLSF 224
P + + + S S+ S + P SS S SL +SIP + SS + SLS+S S
Sbjct: 202 PTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSS 261
Query: 223 NQINSS 206
+SS
Sbjct: 262 TASSSS 267
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = -2
Query: 337 FNCPWSSQXSSLINTSIPGRTESSFKNNXSLSTSRLSFNQINSSFNVQ 194
+N S + ++++P + S+F+N + TSR N NS+ ++Q
Sbjct: 3862 YNSTTQSVYYNATSSTVPW-SNSTFRNTSNTMTSRFVSNDFNSTISLQ 3908
>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 4.7
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 150 CRRLKTFLPDSQNQNWTLKELLIWLKDNLLVEREXLFLKDDSVR-PGI-LVLINEEXWEL 323
CRRLK F PD + + L+ +L+ L + VE ++D + R P + V +N W+L
Sbjct: 55 CRRLKEFFPDRKIR---LEYVLLDLSNMASVEAA---VQDIATRFPKLDFVYLNAGAWDL 108
Query: 324 HG 329
G
Sbjct: 109 EG 110
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.4 bits (53), Expect = 4.7
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 150 CRRLKTFLPDSQNQNWTLKELLIWLKDNLLVEREXLFLKDDS-VRPGILVLINEEXWELH 326
CR L+ + +S+ N T E + L +++ L DD ++ G + EE E+
Sbjct: 151 CRNLEDYEEESKESNETTSEAITDLTTVSSPQQQSLLENDDDLIQLGFMEFRPEELKEVL 210
Query: 327 GQLNYELKEND 359
Q+ E+ D
Sbjct: 211 AQVLQEIPLQD 221
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 25.4 bits (53), Expect = 4.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 122 NKVKRKEIALPPFEDIFTGFSKSEL 196
N +K++ + F DIFTG K E+
Sbjct: 55 NIASKKDLEIAEFSDIFTGRVKDEI 79
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 6.2
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = -2
Query: 334 NCPWSSQXSSLINTSIPGRTESSFKNNXSLSTSRLSFNQINSSFNVQF*F*ESGKNVFKR 155
N P SSQ SS+ R S ++N ++ S + SSF Q+ G ++R
Sbjct: 157 NDPQSSQSSSVSRNPASSRAGSPTRDNAPAASPASSEPRTFSSFEDQYGRLPPG---WER 213
Query: 154 RQCNFFPLYFIKEQFRS 104
R N Y++ RS
Sbjct: 214 RTDNLGRTYYVDHNTRS 230
>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 6.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -3
Query: 315 SXLH*STRVYQVGQNHPSRTTXLFPPA 235
S + + ++ VG+N+P+ + LFPP+
Sbjct: 162 SKIRANIKLKDVGENYPNLSEFLFPPS 188
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 24.6 bits (51), Expect = 8.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 322 SSQXSSLINTSIPGRTESSFKNNXSLSTSRLSFNQINSSFN 200
+ Q SSL++T + S S++ L+FN SS N
Sbjct: 25 AQQKSSLLHTQNESSHQPSLNKLGGFSSASLNFNSSRSSTN 65
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 24.6 bits (51), Expect = 8.2
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -2
Query: 334 NCPWSSQXSSLINTSIPGRTESSFKNNXSLSTSRLSFNQINSSFNV 197
+ P +Q L+N S PG+ +F N + S + ++N F +
Sbjct: 455 SAPIIAQLRGLVNESAPGKHVLTFLNKLESTFSFVESRRMNVDFTL 500
>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 349
Score = 24.6 bits (51), Expect = 8.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 4 IFVYINELHMTYSSFEF 54
IFV +LH+ ++SFEF
Sbjct: 174 IFVIAQQLHIDFASFEF 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,689,897
Number of Sequences: 5004
Number of extensions: 31263
Number of successful extensions: 107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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