Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E23
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0304 - 16469075-16469192,16469874-16469956,16470079-164701...    88   3e-18
09_02_0154 + 5055946-5058721,5058754-5058770                           30   0.88 
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59...    29   2.7  
12_01_0371 - 2851186-2851491,2851582-2851765,2851967-2852156,285...    28   3.5  
01_03_0223 + 13924231-13924510,13924670-13924893,13925482-139257...    28   4.7  
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687     27   6.2  
11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389           27   8.2  

>07_03_0304 -
           16469075-16469192,16469874-16469956,16470079-16470157,
           16470269-16470291
          Length = 100

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 41/73 (56%), Positives = 53/73 (72%)
 Frame = +3

Query: 174 PDSQNQNWTLKELLIWLKDNLLVEREXLFLKDDSVRPGILVLINEEXWELHGQLNYELKE 353
           P+  +    +K LL W+K NL+ ER  +FLK DSVRPG+LVLIN+  WEL G L+ EL+E
Sbjct: 28  PNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSVRPGVLVLINDCDWELCGGLDAELEE 87

Query: 354 NDKIMFISTLHGG 392
            D ++FISTLHGG
Sbjct: 88  KDVVVFISTLHGG 100


>09_02_0154 + 5055946-5058721,5058754-5058770
          Length = 930

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 11/29 (37%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
 Frame = +3

Query: 300 INEEXWEL-HGQLNYELKENDKIMFISTL 383
           I+E  W+L +GQLN++L +N K+ +++++
Sbjct: 393 IDEAEWKLFYGQLNWQLTKNQKLNYVTSI 421


>01_01_0078 +
           587975-588179,588506-588606,589087-589167,589240-590178,
           590388-590542,590837-590902,590963-591023,591659-591853,
           591939-592049,592116-592280
          Length = 692

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = -3

Query: 300 STRVYQVGQNHPSRTTXLFPPAGCLLTKSTALLTSNSDFENPVKMSSNGGSAISFLFTLL 121
           S+ V      H      L   +G LL  + ++L+S+   + P++MSS    A+     ++
Sbjct: 354 SSTVASSSSAHMDMPVPLLASSGQLLQNAPSMLSSSQSMQTPLQMSSKDFKAVESKTRVV 413

Query: 120 KSNSAPPPN 94
           +     PP+
Sbjct: 414 EPLLPDPPS 422


>12_01_0371 -
           2851186-2851491,2851582-2851765,2851967-2852156,
           2853375-2853613,2853862-2853947,2854720-2854827,
           2854929-2855031,2855152-2855213
          Length = 425

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +3

Query: 270 DSVRPGILVLINEEXWELHGQLNYELKENDKIMFISTLHG 389
           +++ P +L+L  E  W + G  + +  +  ++++ S+LHG
Sbjct: 213 ENISPDLLLLNKEYAWHIGGGFSQQEVQEWRLLYHSSLHG 252


>01_03_0223 +
           13924231-13924510,13924670-13924893,13925482-13925735,
           13926041-13926422,13926938-13927369
          Length = 523

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 291 LVLINEEXWELHGQLNYELKENDKIMFISTL 383
           L+L N E WE H ++ +    +DK+ F+S +
Sbjct: 143 LILANGEDWERHRKVVHPAFNHDKLKFMSVV 173


>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
          Length = 353

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 258 TTXLFPPAGCLLTKSTALLTSNSDFENPVKMSSNGGSAISFLFTLLKSNSAPPP 97
           T  L  P   +   +T  L S++    P   SSN  S ++F ++    N +PPP
Sbjct: 7   TRPLLRPTCSVARFNTRRLLSSTSSPPPTNRSSNTNSPVAFDWSDDDDNPSPPP 60


>11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389
          Length = 1024

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +2

Query: 47  LNLTIEMAETLTVXVMFGGGAELLFNKVKRKEIALPPFEDIFTGFSKSELDVKRAVD 217
           L + I +A T+++ V           K KRK ++LP F+  F   S    D+ RA D
Sbjct: 647 LKVVIPLATTVSLAVTIVFALFFWREKQKRKSVSLPSFDSSFPKVSYH--DLARATD 701


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,683,147
Number of Sequences: 37544
Number of extensions: 191526
Number of successful extensions: 519
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)