Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E23
         (491 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)               32   0.30 
SB_36498| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-14)                 29   2.1  
SB_48838| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-12)                 29   2.1  
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_31539| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
          Length = 474

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
 Frame = -3

Query: 360 YHFL*VHNLTVRGAPSXLH*STRVYQVGQ--NHPSRTTXLFPPAGCLLTKSTALLTSNSD 187
           YHF   H+L +R  PS        Y  GQ    P R            T ST+   S S 
Sbjct: 98  YHFKVAHHLDMRREPSRYRMMLARYFTGQISRPPPRPASTSLTTSAAFTSSTSSAASTSL 157

Query: 186 FENPVKMSSNGGSAISFL 133
             +PV  SS   +A + L
Sbjct: 158 TTSPVSTSSTSSAASTSL 175


>SB_36498| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-14)
          Length = 596

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 178 SGKNVFKRRQCNFFPLYFIKEQFRSAPKHHXY 83
           S   + KR++ NFFP+ ++   + SA K H +
Sbjct: 227 SEAQLIKRQKENFFPILYLVNAYHSAKKKHFF 258


>SB_48838| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-12)
          Length = 556

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 178 SGKNVFKRRQCNFFPLYFIKEQFRSAPKHHXY 83
           S   + KR++ NFFP+ ++   + SA K H +
Sbjct: 193 SEAQLIKRQKENFFPILYLVNAYHSAKKKHFF 224


>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 316  QXSSLINTSIPGRTESSFKNNXSLSTSRLSFNQINSSFNV 197
            Q  +LI  +   +T +S  NN + STS ++ N  N  +N+
Sbjct: 1096 QQQTLITATTTAKTSNSSNNNYAASTSNIN-NSNNKHYNI 1134


>SB_31539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 835

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 295 TSIPGRTESSFKNNXSLSTSRLSFNQINSSFNVQF 191
           ++I GRT     NN  L+TS    N +N++   ++
Sbjct: 314 SAIGGRTRQGHANNTRLATSNAKENALNAAHGARY 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,196,679
Number of Sequences: 59808
Number of extensions: 217398
Number of successful extensions: 518
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)