Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E23
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 183 ENPVKMSSNGGSAISFLFTLLKSNSAPPPNITXTVRVSAISI 58
           E P    S+ GS+I  L       S PPPN   + +VS +S+
Sbjct: 354 EPPKSSESSTGSSIPKLNLSTALMSQPPPNFGVS-QVSPVSM 394


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 174  PDSQNQNWTLKELLI 218
            PD+ ++NWT K + +
Sbjct: 1147 PDTDSENWTPKMMAV 1161


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -3

Query: 231 CLLTKSTALLTSNSDFENPVKMSSNGGSAISFLFTLLKSNSAPPP 97
           C+L  S ALL      E+  K++    + +S    L+    + PP
Sbjct: 224 CILINSVALLVFYVPSESGEKVTLGISALLSMTVFLMTIRESLPP 268


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 222 LKDNLLVEREXLFLKDDSVRPGILVLINEEXWELHGQLNYELKE 353
           +KDNLL+      +  D+     LV I    ++ +   N E +E
Sbjct: 214 MKDNLLLYNHARLMSQDNHSKEYLVSIMFSHYDRNNNGNLEREE 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,747
Number of Sequences: 438
Number of extensions: 1999
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)