Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E23
         (491 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|...    31   0.32 
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|...    31   0.32 
At1g45616.1 68414.m05200 leucine-rich repeat family protein cont...    30   0.74 
At4g34070.1 68417.m04834 expressed protein                             29   2.2  
At5g06260.1 68418.m00700 nucleolar protein-related contains weak...    27   5.2  
At4g16230.1 68417.m02463 GDSL-motif lipase/hydrolase family prot...    27   5.2  
At5g49330.1 68418.m06104 myb family transcription factor contain...    27   6.9  
At5g47430.1 68418.m05844 expressed protein                             27   6.9  
At4g18200.1 68417.m02705 purine permease family protein similar ...    27   9.1  
At2g33080.1 68415.m04056 leucine-rich repeat family protein cont...    27   9.1  
At2g32680.1 68415.m03995 disease resistance family protein conta...    27   9.1  

>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 435

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 168 MSSNGGSAISFLFTLLKSNSAPPPNITXTVRVSAIS 61
           +SS GG A ++ F L K  S PP + T T R ++ S
Sbjct: 5   LSSGGGGAAAYSFELEKVKSPPPSSSTTTTRATSPS 40


>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 424

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 168 MSSNGGSAISFLFTLLKSNSAPPPNITXTVRVSAIS 61
           +SS GG A ++ F L K  S PP + T T R ++ S
Sbjct: 5   LSSGGGGAAAYSFELEKVKSPPPSSSTTTTRATSPS 40


>At1g45616.1 68414.m05200 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to disease resistance
           protein [Lycopersicon esculentum] gi|3894383|gb|AAC78591
          Length = 994

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 307 SLINTSIPGRTESSFKNNXSLSTSRLSFNQINSSFNVQ 194
           S  + S  G   SS  N  SL+T  LS+NQ+N + N++
Sbjct: 404 SACDNSFTGSIPSSLFNISSLTTLGLSYNQLNDTTNIK 441


>At4g34070.1 68417.m04834 expressed protein
          Length = 363

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 261 LKDDSVRPGILVLINEEXWELHGQLNYELKENDKIMFISTLHG 389
           L +DSV    L+L  E  W + G L +      K+++ S+LHG
Sbjct: 302 LYEDSVSSDRLLLKKEYAWHIGGALPHHELVEWKLLYRSSLHG 344


>At5g06260.1 68418.m00700 nucleolar protein-related contains weak
           similarity to nucleolar protein C7C (GI:13540302)
           [Rattus norvegicus]
          Length = 424

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 261 LKDDSVRPGILVLINEEXWELHGQLNYELKENDKIMFISTLHG 389
           L +DSV    L+L  E  W + G L +      K+++ S++HG
Sbjct: 206 LYEDSVSSDRLLLKKEYAWHIGGALPHHELVEWKLLYHSSVHG 248


>At4g16230.1 68417.m02463 GDSL-motif lipase/hydrolase family protein
           similar to SP|P40602 Anther-specific proline-rich
           protein APG precursor {Arabidopsis thaliana}; contains
           Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase
          Length = 340

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 228 LLTKSTALLTSNS-DFENPVKMSSNGGSAISFLFTLLKSNSAPPPNITXTVRVSAI 64
           L T S A    N  DF +P    +NG + +  ++  L S+   PP +  T   S I
Sbjct: 47  LATLSKANYVPNGIDFGSPTGRFTNGRTIVDIVYQALGSDELTPPYLAPTTSGSLI 102


>At5g49330.1 68418.m06104 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA binding domain;
           identical to cDNA putative transcription factor
           (At5g49330) GI:15420625
          Length = 342

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 307 SLINTSIPGRTESSFKN--NXSLSTSRLSFNQIN 212
           SLI T +PGRT++  KN  N  LS    +F  ++
Sbjct: 90  SLIATHLPGRTDNEIKNYWNSHLSRKIYAFTAVS 123


>At5g47430.1 68418.m05844 expressed protein 
          Length = 879

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 189 DFENPVKMSSNGGSAISFLFTLLKSNSAPPPNI 91
           D EN   M +NG SA +      KS  APPP I
Sbjct: 628 DGENSRMMMNNGTSASASSINPNKSRQAPPPPI 660


>At4g18200.1 68417.m02705 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 1128

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 228 LLTKSTALLTSNSDFENPVKMS 163
           LLT S+ALL  N+D EN  K+S
Sbjct: 191 LLTISSALLVVNTDSENTAKVS 212


>At2g33080.1 68415.m04056 leucine-rich repeat family protein
           contains leucine rich-repeat domain Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 740

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = -2

Query: 382 NVDMNMILSFSLSS*FNCPWSSQXSSLINTSIPGRTESSFKNNXSLSTSRLSFNQINSSF 203
           N+  N   S S  S F      +   L   S  G+  SSF N   L+   LS NQ+   F
Sbjct: 106 NLSHNNFTSTSFPSEFGNLNKVEVLDLSFNSFTGQVPSSFSNLSQLTELHLSNNQLTGGF 165


>At2g32680.1 68415.m03995 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 890

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -2

Query: 370 NMILSFSLSS*FNCPWSSQXSSLINTSIPGRTESSFKNNXSLSTSRLSFNQINSSF 203
           N + S SL S F      +   L +    G+  SSF N   L+   LS+N++  SF
Sbjct: 108 NNLTSSSLPSGFGNLKRLEGLFLSSNGFLGQVPSSFSNLTMLAQLDLSYNKLTGSF 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,678,114
Number of Sequences: 28952
Number of extensions: 158901
Number of successful extensions: 508
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)