Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E22
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    29   0.58 
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    27   2.3  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    27   2.3  
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    26   5.4  
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ...    25   9.5  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   9.5  

>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -1

Query: 595 IHLPLWDLEAQYYVLAYGSQTSPFRWSSVSDDGTLSLNLVFLLAFPFFQDHQVAFAVSII 416
           +H P   LE  ++      +   F WS V+D    SL    L+A P    HQ+A+A  +I
Sbjct: 135 VHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSL---CLMAHP----HQLAYAALLI 187

Query: 415 LC 410
            C
Sbjct: 188 SC 189


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 142 PMQLFFKPNATSNLKPNINVTSVACVSFFNKLPAE 246
           P    +  +  +NL  NIN TSV   +F N + ++
Sbjct: 137 PSPAIYSSSMATNLNKNINSTSVPAYNFHNSMTSD 171


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +1

Query: 88  STFIMCSKILTLSNVLSRPMQLF-FKPNATSNLKPNINVTSVACVSFFNKLPAEKLWKSV 264
           STF  CS + +L+N   +P  +F FKPN+T +L+  +++ S   +       A+K W  +
Sbjct: 246 STF--CSTLSSLTNS-EKPTYIFNFKPNSTPDLR--LSIESCLDLLLHPPSSAQKNWSWI 300

Query: 265 TSV 273
             V
Sbjct: 301 KHV 303


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 169 ATSNLKPNINVTSVACVSFFNKLPAE 246
           ATS+L P +++     +  FNK P E
Sbjct: 2   ATSSLTPGVSLDENGSIKLFNKFPFE 27


>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = -3

Query: 233 LLKKLTQATEVTLIFGFRLEVAFGLKNNCIGLLKTLL----SVKIFEHIIKVETESELCF 66
           LL +    ++VTL    +L+ ++G+ +   G+L++ L    SV    H+ +   E +  F
Sbjct: 107 LLSRGYHLSDVTLEKSIQLDQSYGVSSKFKGILESALSGVRSVNERYHVTEKANEVDNKF 166

Query: 65  KVNNLISLYSLLFKCFF 15
            +++ ++  S L   +F
Sbjct: 167 AISDKLNRTSSLVSTYF 183


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +1

Query: 388 LSAPVIRGRELLKQQKLPDDPERMEKLIKIRDSMTKFRRL 507
           LSA V RG   +++  L   PER+++LI+I    TKF  L
Sbjct: 492 LSA-VRRGCRQIEEIVLKLSPERIQELIEIFIRATKFETL 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,394
Number of Sequences: 5004
Number of extensions: 48473
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)