Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E22
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0601 - 5268520-5271112,5272448-5272950                           32   0.46 
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626...    29   4.2  
06_03_1053 + 27224824-27225618                                         27   9.8  
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459...    27   9.8  
01_06_0650 + 30872350-30872736,30873388-30873639,30873723-308738...    27   9.8  

>08_01_0601 - 5268520-5271112,5272448-5272950
          Length = 1031

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 21/60 (35%), Positives = 33/60 (55%)
 Frame = +1

Query: 343 GQVIGTGKVNMLWPGLSAPVIRGRELLKQQKLPDDPERMEKLIKIRDSMTKFRRLKLSSI 522
           G V+ T ++  L P  +A + R R     +    DP++ME+L K+ DSMTK   L L+ +
Sbjct: 347 GGVVRTRELGKLRPEQAAELFRRRVYGHGEP---DPKKMEQLKKVVDSMTKGSNLPLNIV 403


>04_03_1020 -
           21761297-21761555,21761630-21761739,21762402-21762635,
           21762710-21762817,21762910-21762969,21763549-21763624,
           21763710-21763870,21764485-21764547,21764657-21764744,
           21765062-21765592,21766344-21766783
          Length = 709

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/70 (22%), Positives = 37/70 (52%)
 Frame = +1

Query: 340 RGQVIGTGKVNMLWPGLSAPVIRGRELLKQQKLPDDPERMEKLIKIRDSMTKFRRLKLSS 519
           +G+++G+G    ++ G ++   +   + + Q + DDP   E+L ++   +   R+L   +
Sbjct: 306 KGKLLGSGTFGQVYLGFNSENGQFCAIKEVQVISDDPHSKERLKQLNQEIDMLRQLSHPN 365

Query: 520 IERGWSGSRM 549
           I + + GS M
Sbjct: 366 IVQ-YYGSEM 374


>06_03_1053 + 27224824-27225618
          Length = 264

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = +1

Query: 397 PVIRGRELLKQQKLPDDPERMEKLIKIRD-SMTKF--RRLKLSS 519
           P +RG  LL ++   DD  R+E+ +K+ + +  KF  RR +L++
Sbjct: 81  PHVRGHRLLLERVSEDDARRLERKLKVEELARGKFELRRRRLTA 124


>05_04_0012 +
           17145112-17145205,17145681-17145752,17145832-17145911,
           17146059-17146175,17146282-17146363,17147086-17147141,
           17147258-17147560,17147658-17147744,17148118-17148292,
           17148370-17148491,17149028-17149191,17149277-17149531,
           17150419-17150540,17150656-17150777,17151302-17151450,
           17151565-17151703,17151831-17151866
          Length = 724

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 100 MCSKILTLSNVLSRPMQLFFKPNATSNLKPNINV 201
           +C K+L +S +      +FF   ATS + PNI++
Sbjct: 271 LCGKMLEMSQISKSLRHVFFAQRATSKI-PNISI 303


>01_06_0650 +
           30872350-30872736,30873388-30873639,30873723-30873818,
           30874005-30874173,30874452-30874552,30874910-30875002,
           30876018-30876089,30876509-30876628,30876709-30876759,
           30877621-30877809,30878099-30878266
          Length = 565

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 526 RGWSGSRMPGRSIGPPDPIGEDEFIGF 606
           RG++ S  P RS  PP P+    F GF
Sbjct: 46  RGFTPSSEPSRSAPPPPPLPMPPFAGF 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,591,901
Number of Sequences: 37544
Number of extensions: 295103
Number of successful extensions: 642
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)