Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E22
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49217| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)              29   3.3  
SB_56738| Best HMM Match : Extensin_2 (HMM E-Value=0.076)              29   4.3  
SB_44340| Best HMM Match : Tctex-1 (HMM E-Value=5.6e-05)               28   5.7  
SB_46122| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_49217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 28/84 (33%), Positives = 41/84 (48%)
 Frame = +1

Query: 379 WPGLSAPVIRGRELLKQQKLPDDPERMEKLIKIRDSMTKFRRLKLSSIERGWSGSRMPGR 558
           W G +APVI   +++++ +LP   +  E           FRR      ERGWSG+  PGR
Sbjct: 89  WEGFNAPVILEGDVVEKGRLPGKEDDQE-----------FRRPG-QWFERGWSGTTWPGR 136

Query: 559 SIGPPDPIGEDEFIGFDTKVLQLR 630
             G P     +    FD+ V++LR
Sbjct: 137 KAGNPQRSDREVLKNFDSVVVELR 160


>SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)
          Length = 763

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/72 (31%), Positives = 37/72 (51%)
 Frame = +1

Query: 370 NMLWPGLSAPVIRGRELLKQQKLPDDPERMEKLIKIRDSMTKFRRLKLSSIERGWSGSRM 549
           N LW  L++ + R REL + +K  D      K+ K R ++ + +   ++   R  + SR+
Sbjct: 118 NDLWKTLNSTLERMRELERVRKEHDAMAVQFKIQKHRITLIETQLKDINHTVR--NTSRL 175

Query: 550 PGRSIGPPDPIG 585
           PG   GPP P G
Sbjct: 176 PGPQ-GPPGPQG 186


>SB_56738| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
          Length = 869

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +1

Query: 418 LLKQQKLPDDPERMEKLIKIRDSMTKFRRLKLSSIE--RGWSGSRMPGRSIGPPDPIGED 591
           +L+++   DDP++MEK   ++D M+ F +    S +  R +S S  P +S  P   + ED
Sbjct: 727 VLRRKASVDDPDKMEKRQSVKDMMSLFGQDTDDSSKPTRRFSASGKPQQS--PALRLIED 784

Query: 592 EFIGFDTK 615
              G  TK
Sbjct: 785 RIEGRTTK 792


>SB_44340| Best HMM Match : Tctex-1 (HMM E-Value=5.6e-05)
          Length = 369

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 583 LWDLEAQYYVLAYGSQTSPFRWSSVSDDGTLSLNLVFLLAFPF 455
           LWD ++  +  A     S F  S +  +  L +   FLLAFPF
Sbjct: 160 LWDSKSDNFATASFRNKSLFARSELIRNNRLIVQSTFLLAFPF 202


>SB_46122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 743

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 412 RELLKQQKLPDDPERMEKLIKIRDSMTKFRRLKLSSIERGWSGSRMPGR 558
           ++LL   K   D    E   K RD    FR+LK   +  G   S++P R
Sbjct: 40  KQLLSGIKWQTDHYNKESERKKRDVFNGFRKLKTGIVTHGGRRSKLPAR 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,073,148
Number of Sequences: 59808
Number of extensions: 338787
Number of successful extensions: 743
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)