Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E22
         (652 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014172-1|AAH14172.1|  430|Homo sapiens mitochondrial ribosomal...    95   3e-19
AC092835-1|AAX88980.1|  430|Homo sapiens unknown protein.              95   3e-19
AB049940-1|BAB40993.1|  430|Homo sapiens mitochondrial ribosomal...    95   3e-19
AK058160-1|BAB71695.1|  251|Homo sapiens protein ( Homo sapiens ...    90   5e-18
BC000219-1|AAH00219.2|  280|Homo sapiens MRPS5 protein protein.        51   4e-06

>BC014172-1|AAH14172.1|  430|Homo sapiens mitochondrial ribosomal
           protein S5 protein.
          Length = 430

 Score = 94.7 bits (225), Expect = 3e-19
 Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
 Frame = +1

Query: 220 SFFNKLPAEKLWKSVTSVSNXXXXXXXXXXXXXXXXXXLNRGQVIGTGKVNMLWPGLSAP 399
           SFF KL A++LWK   + +                   LNRGQ+IG G+   LWPGL+ P
Sbjct: 88  SFFTKLTADELWKGALAETGAGAKKGRGKRTKKKKRKDLNRGQIIGEGRYGFLWPGLNVP 147

Query: 400 VIR-GRELLKQQKLPDDPERME-KLIKIRDSMTKFRRLKLSSIERGWSGSRMPGRSIGPP 573
           +++ G      Q+  ++ E++E  +I+ R+   + +++K+   ERGWSG+   G S+GPP
Sbjct: 148 LMKNGAVQTIAQRSKEEQEKVEADMIQQREEWDRKKKMKVKR-ERGWSGNSWGGISLGPP 206

Query: 574 D--PIGEDEFIGFDTKVLQLRSLLIM 645
           D  P GE  +  FDT++L++R++  M
Sbjct: 207 DPGPCGE-TYEDFDTRILEVRNVFTM 231


>AC092835-1|AAX88980.1|  430|Homo sapiens unknown protein.
          Length = 430

 Score = 94.7 bits (225), Expect = 3e-19
 Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
 Frame = +1

Query: 220 SFFNKLPAEKLWKSVTSVSNXXXXXXXXXXXXXXXXXXLNRGQVIGTGKVNMLWPGLSAP 399
           SFF KL A++LWK   + +                   LNRGQ+IG G+   LWPGL+ P
Sbjct: 88  SFFTKLTADELWKGALAETGAGAKKGRGKRTKKKKRKDLNRGQIIGEGRYGFLWPGLNVP 147

Query: 400 VIR-GRELLKQQKLPDDPERME-KLIKIRDSMTKFRRLKLSSIERGWSGSRMPGRSIGPP 573
           +++ G      Q+  ++ E++E  +I+ R+   + +++K+   ERGWSG+   G S+GPP
Sbjct: 148 LMKNGAVQTIAQRSKEEQEKVEADMIQQREEWDRKKKMKVKR-ERGWSGNSWGGISLGPP 206

Query: 574 D--PIGEDEFIGFDTKVLQLRSLLIM 645
           D  P GE  +  FDT++L++R++  M
Sbjct: 207 DPGPCGE-TYEDFDTRILEVRNVFTM 231


>AB049940-1|BAB40993.1|  430|Homo sapiens mitochondrial ribosomal
           protein S5 protein.
          Length = 430

 Score = 94.7 bits (225), Expect = 3e-19
 Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
 Frame = +1

Query: 220 SFFNKLPAEKLWKSVTSVSNXXXXXXXXXXXXXXXXXXLNRGQVIGTGKVNMLWPGLSAP 399
           SFF KL A++LWK   + +                   LNRGQ+IG G+   LWPGL+ P
Sbjct: 88  SFFTKLTADELWKGALAETGAGAKKGRGKRTKKKKRKDLNRGQIIGEGRYGFLWPGLNVP 147

Query: 400 VIR-GRELLKQQKLPDDPERME-KLIKIRDSMTKFRRLKLSSIERGWSGSRMPGRSIGPP 573
           +++ G      Q+  ++ E++E  +I+ R+   + +++K+   ERGWSG+   G S+GPP
Sbjct: 148 LMKNGAVQTIAQRSKEEQEKVEADMIQQREEWDRKKKMKVKR-ERGWSGNSWGGISLGPP 206

Query: 574 D--PIGEDEFIGFDTKVLQLRSLLIM 645
           D  P GE  +  FDT++L++R++  M
Sbjct: 207 DPGPCGE-TYEDFDTRILEVRNVFTM 231


>AK058160-1|BAB71695.1|  251|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25431 fis, clone TST06424. ).
          Length = 251

 Score = 90.2 bits (214), Expect = 5e-18
 Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
 Frame = +1

Query: 220 SFFNKLPAEKLWKSVTSVSNXXXXXXXXXXXXXXXXXXLNRGQVIGTGKVNMLWPGLSAP 399
           SFF KL A++LWK   + +                   LNRGQ+IG G+   LWPGL+ P
Sbjct: 88  SFFTKLTADELWKGALAETGAGAKKGRGKRTKKKKRKDLNRGQIIGEGRYGFLWPGLNVP 147

Query: 400 VIR-GRELLKQQKLPDDPERME-KLIKIRDSMTKFRRLKLSSIERGWSGSRMPGRSIGPP 573
           +++ G      Q+  ++ E++E  +I+ R+   + +++K+   ERGWSG+   G S+GPP
Sbjct: 148 LMKNGAVQTIAQRSKEEQEKVEADMIQQREEWDRKKKMKVKR-ERGWSGNSWGGISLGPP 206

Query: 574 D--PIGEDEFIGFDTKVLQL 627
           D  P GE  +  FDT++L++
Sbjct: 207 DPGPCGE-TYEDFDTRILEV 225


>BC000219-1|AAH00219.2|  280|Homo sapiens MRPS5 protein protein.
          Length = 280

 Score = 50.8 bits (116), Expect = 4e-06
 Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
 Frame = +1

Query: 430 QKLPDDPERMEK-LIKIRDSMTKFRRLKLSSIERGWSGSRMPGRSIGPPD--PIGEDEFI 600
           Q+  ++ E++E  +I+ R+   + +++K+   ERGWSG+   G S+GPPD  P GE  + 
Sbjct: 9   QRSKEEQEKVEADMIQQREEWDRKKKMKVKR-ERGWSGNSWGGISLGPPDPGPCGE-TYE 66

Query: 601 GFDTKVLQLRSLLIM 645
            FDT++L++R++  M
Sbjct: 67  DFDTRILEVRNVFTM 81


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,805,996
Number of Sequences: 237096
Number of extensions: 1752111
Number of successful extensions: 3735
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3727
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)