Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_E22
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09415.1 68414.m01053 NPR1/NIM1-interacting protein 3 (NIMIN-... 30 1.2
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 30 1.5
At5g51080.1 68418.m06331 RNase H domain-containing protein low s... 30 1.5
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 30 1.5
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 30 1.5
At3g53140.1 68416.m05856 O-diphenol-O-methyl transferase, putati... 28 4.7
At2g37080.1 68415.m04550 myosin heavy chain-related low similari... 28 4.7
At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138... 28 4.7
At4g16835.1 68417.m02541 pentatricopeptide (PPR) repeat-containi... 28 6.2
At4g34290.1 68417.m04874 SWIB complex BAF60b domain-containing p... 27 8.2
>At1g09415.1 68414.m01053 NPR1/NIM1-interacting protein 3 (NIMIN-3)
identical to NIMIN-3 protein [Arabidopsis thaliana]
GI:12057158, cDNA NIMIN-3 protein (nimin-3
gene)GI:12057157
Length = 112
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 406 RGRELLKQQKLPDDPERMEKLIKIRDSMTKFRRLKLSSIER 528
R R+ +K +K D+ E+MEKL + + + R+ SS+E+
Sbjct: 3 RDRKRVKMEKEDDEEEKMEKLYTVLKNAREMRKYVNSSMEK 43
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +1
Query: 346 QVIGTGKVNMLWPGLSAPVIRGRELLKQQKLPDDPERMEKLIKIRDSMTKFRRLKLSSIE 525
QV G + + +P V+ + + +L D + +L I+D KF+ K+ SI+
Sbjct: 71 QVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQ 130
Query: 526 RGWSG----SRMPGRSIGPPDPI 582
G G + GR+I PDP+
Sbjct: 131 FGQKGIPYLNTYDGRTIRYPDPL 153
>At5g51080.1 68418.m06331 RNase H domain-containing protein low
similarity to GAG-POL precursor [Oryza sativa (japonica
cultivar-group)] GI:5902445; contains Pfam profile
PF00075: RNase H
Length = 322
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 142 PMQLFFKPNATSNLKP-NINVTSVACVSFFNKLPAEKLWKSVTSVSN 279
P F + S+LKP +++V+SV C S +K K+ KS SVS+
Sbjct: 27 PWNQCFYTSLKSSLKPASVSVSSVHCYSSRSKTAKSKMSKSSVSVSD 73
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +1
Query: 346 QVIGTGKVNMLWPGLSAPVIRGRELLKQQKLPDDPERMEKLIKIRDSMTKFRRLKLSSIE 525
QV G + + +P V+ + + +L D + +L I+D KF+ K+ SI+
Sbjct: 71 QVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQ 130
Query: 526 RGWSG----SRMPGRSIGPPDPI 582
G G + GR+I PDP+
Sbjct: 131 FGQKGIPYLNTYDGRTIRYPDPL 153
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +1
Query: 346 QVIGTGKVNMLWPGLSAPVIRGRELLKQQKLPDDPERMEKLIKIRDSMTKFRRLKLSSIE 525
QV G + + +P V+ + + +L D + +L I+D KF+ K+ SI+
Sbjct: 71 QVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQ 130
Query: 526 RGWSG----SRMPGRSIGPPDPI 582
G G + GR+I PDP+
Sbjct: 131 FGQKGIPYLNTYDGRTIRYPDPL 153
>At3g53140.1 68416.m05856 O-diphenol-O-methyl transferase, putative
similar to GI:6688808 [Medicago sativa subsp. x varia],
caffeic acid O-methyltransferase (homt1), Populus
kitakamiensis, EMBL:PKHOMT1A
Length = 359
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Frame = +1
Query: 361 GKVNMLWPGLSAPVIRGRELLKQQKLPD------DPERMEKLIKIRDSMTKFRRLKLSSI 522
G + +W G + + E+L + LP DPE +++++++ S F + SI
Sbjct: 36 GIADAIWNGGANSPLSAAEILPRLHLPSHTTIGGDPENLQRILRMLTSYGVFSEHLVGSI 95
Query: 523 ERGWS 537
ER +S
Sbjct: 96 ERKYS 100
>At2g37080.1 68415.m04550 myosin heavy chain-related low similarity
to myosin heavy chain [Rana catesbeiana] GI:4249701
Length = 583
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 399 CDQRQRIIETAKAT**S*KNGKANKNTRFNDKVPSSETELHRKGLVWLPY 548
CDQ ++ E A AT S N N N ++ ++ S E+ L R+ + PY
Sbjct: 504 CDQWRKAAEAA-ATMLSGGNNNNNSNGKYVERTGSLESPLRRRNVNMSPY 552
>At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as 'axi
1 protein from Nicotiana tabacum -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 567
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 25 LNSNEYSDIKLFTLKQSSDSVSTFIMCSKILTLSNVLSRP 144
LN +SD K F LK+ +DS+ TF C ++ N + P
Sbjct: 521 LNMRSHSDSKGFELKRPNDSIYTF-PCPDCMSRRNKTTTP 559
>At4g16835.1 68417.m02541 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 575
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = -3
Query: 185 FRLEVAFGLKNNCIGLLKTLL------SVKIFEHIIKVETESELCFKVNNLISLYSLLFK 24
FR + G++ N GL LL ++++ I ++ ++S LC V L SL S+ K
Sbjct: 186 FRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCK 245
Query: 23 C 21
C
Sbjct: 246 C 246
>At4g34290.1 68417.m04874 SWIB complex BAF60b domain-containing
protein contains Pfam profile PF02201: BAF60b domain of
the SWIB complex
Length = 144
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +1
Query: 73 SSDSVSTFIMCSKILTLSNVLSRPMQLFFKPNATSNLKPNINVTSVACVS 222
SS ST +C L + + P L PN +NL+ VTS A S
Sbjct: 4 SSGIFSTTFLCVDTAPLRSSMLSPSSLRLSPNHPTNLRMVRAVTSAAAAS 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,945,241
Number of Sequences: 28952
Number of extensions: 248716
Number of successful extensions: 593
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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