Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_E19
(585 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotei... 128 1e-28
UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46... 125 7e-28
UniRef50_Q9N4G9 Cluster: Probable small nuclear ribonucleoprotei... 105 8e-22
UniRef50_O74966 Cluster: Probable small nuclear ribonucleoprotei... 88 1e-16
UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein... 81 1e-14
UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein polypep... 81 3e-14
UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotei... 77 3e-13
UniRef50_Q8IB57 Cluster: Small nuclear ribonucleoprotein, putati... 76 5e-13
UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is associ... 75 9e-13
UniRef50_Q2URY1 Cluster: Predicted protein; n=1; Aspergillus ory... 73 4e-12
UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1; ... 71 2e-11
UniRef50_Q6CRN4 Cluster: Similar to sp|P40204 Saccharomyces cere... 66 6e-10
UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein ... 62 7e-09
UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1... 62 1e-08
UniRef50_A6QY75 Cluster: Predicted protein; n=2; Fungi/Metazoa g... 60 4e-08
UniRef50_Q7SDP3 Cluster: Putative uncharacterized protein NCU019... 58 2e-07
UniRef50_A7TGG5 Cluster: Putative uncharacterized protein; n=1; ... 57 3e-07
UniRef50_A7QWV4 Cluster: Chromosome chr13 scaffold_210, whole ge... 56 5e-07
UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 56 8e-07
UniRef50_Q4N4E0 Cluster: Small nuclear ribonucleoprotein G, puta... 56 8e-07
UniRef50_Q9UK45 Cluster: U6 snRNA-associated Sm-like protein LSm... 55 1e-06
UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, wh... 54 2e-06
UniRef50_Q6MY59 Cluster: U6 snrna-associated sm-like protein, pu... 54 2e-06
UniRef50_Q40942 Cluster: Small nucleolar ribonucleoprotein E hom... 54 2e-06
UniRef50_Q4Q5H5 Cluster: Small nuclear ribonucleoprotein, putati... 54 3e-06
UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative; ... 53 4e-06
UniRef50_O74499 Cluster: U6 snRNP-associated protein Lsm7; n=19;... 53 6e-06
UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3; M... 52 1e-05
UniRef50_A2GMH6 Cluster: Sm protein; n=3; Trichomonas vaginalis ... 51 2e-05
UniRef50_Q4Z0C4 Cluster: U6 snRNA-associated Sm-like protein, pu... 50 3e-05
UniRef50_Q5CY65 Cluster: Putative uncharacterized protein; n=1; ... 50 4e-05
UniRef50_UPI0000D9E97B Cluster: PREDICTED: LSM7 homolog, U6 smal... 50 5e-05
UniRef50_P53905 Cluster: U6 snRNA-associated Sm-like protein LSm... 50 5e-05
UniRef50_A4VCU1 Cluster: Small nuclear ribonucleoprotein E, puta... 49 9e-05
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 49 9e-05
UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog... 48 2e-04
UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4; T... 47 4e-04
UniRef50_A7PDU1 Cluster: Chromosome chr11 scaffold_13, whole gen... 46 5e-04
UniRef50_Q4Q9J1 Cluster: Lsm7p protein, putative; n=6; Trypanoso... 46 5e-04
UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_A3H6D3 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 45 0.002
UniRef50_Q6BPZ2 Cluster: Debaryomyces hansenii chromosome E of s... 44 0.003
UniRef50_Q9UUI1 Cluster: U6 snRNA-associated Sm-like protein LSm... 44 0.003
UniRef50_P62312 Cluster: U6 snRNA-associated Sm-like protein LSm... 44 0.003
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 43 0.005
UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 43 0.006
UniRef50_A2Y859 Cluster: Putative uncharacterized protein; n=2; ... 42 0.008
UniRef50_Q4PA95 Cluster: Putative uncharacterized protein; n=1; ... 42 0.008
UniRef50_Q01J34 Cluster: OSIGBa0140O07.9 protein; n=5; Oryza sat... 42 0.011
UniRef50_Q8SRW7 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN G; n=1;... 42 0.011
UniRef50_Q6DBW5 Cluster: Zgc:101136; n=6; Euteleostomi|Rep: Zgc:... 42 0.014
UniRef50_A4S5K5 Cluster: Predicted protein; n=1; Ostreococcus lu... 41 0.019
UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog... 41 0.019
UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm... 41 0.019
UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11; Saccharomyc... 41 0.019
UniRef50_Q98S49 Cluster: Small nuclear ribonucleoprotein F; n=1;... 41 0.025
UniRef50_Q1HQ51 Cluster: LSM1-like protein; n=3; Endopterygota|R... 41 0.025
UniRef50_A1DH91 Cluster: Small nuclear ribonucleoprotein (LSM1),... 41 0.025
UniRef50_P87173 Cluster: Uncharacterized protein C3D6.08c; n=1; ... 41 0.025
UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm... 41 0.025
UniRef50_Q9AVY1 Cluster: Putative small nuclear ribonucleoprotei... 40 0.033
UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albica... 40 0.033
UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4; Th... 40 0.033
UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10; A... 40 0.033
UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1; Ae... 40 0.033
UniRef50_O75243 Cluster: R30783_1; n=3; Mammalia|Rep: R30783_1 -... 40 0.043
UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51... 40 0.043
UniRef50_O15116 Cluster: U6 snRNA-associated Sm-like protein LSm... 40 0.043
UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albica... 40 0.057
UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18... 39 0.076
UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein, ... 39 0.100
UniRef50_A1CE19 Cluster: LSM domain protein; n=3; Trichocomaceae... 39 0.100
UniRef50_A3DMZ9 Cluster: Like-Sm ribonucleoprotein, core; n=1; S... 39 0.100
UniRef50_Q4V6D7 Cluster: IP05148p; n=2; Drosophila melanogaster|... 38 0.13
UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia... 38 0.17
UniRef50_Q5CQ90 Cluster: Small nuclear ribonucleoprotein U6; n=1... 38 0.23
UniRef50_Q4MZX3 Cluster: Small nuclear ribonucleoprotein, putati... 38 0.23
UniRef50_Q5K712 Cluster: U6 snRNA-associated sm-like protein lsm... 38 0.23
UniRef50_A3LX11 Cluster: Predicted protein; n=3; Saccharomycetac... 38 0.23
UniRef50_O29885 Cluster: SnRNP, putative; n=1; Archaeoglobus ful... 38 0.23
UniRef50_Q98RT8 Cluster: Small nucleolar ribonucleoprotein G; n=... 37 0.30
UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm... 37 0.30
UniRef50_Q9Y4Y9 Cluster: U6 snRNA-associated Sm-like protein LSm... 37 0.30
UniRef50_Q20229 Cluster: Putative uncharacterized protein lsm-1;... 37 0.40
UniRef50_Q6CGS0 Cluster: Similar to sp|P47017 Saccharomyces cere... 37 0.40
UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE, pu... 37 0.40
UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associa... 37 0.40
UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;... 36 0.53
UniRef50_Q2R066 Cluster: Small nuclear ribonucleoprotein F, puta... 36 0.53
UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2; ... 36 0.53
UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core, ... 36 0.53
UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm... 36 0.53
UniRef50_Q4JAY5 Cluster: Conserved Archaeal protein; n=4; Sulfol... 36 0.53
UniRef50_Q2FM21 Cluster: Like-Sm ribonucleoprotein, core; n=4; M... 36 0.53
UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.70
UniRef50_Q7R4T3 Cluster: GLP_440_43387_42998; n=1; Giardia lambl... 36 0.70
UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lambl... 36 0.70
UniRef50_A4VDT4 Cluster: Putative uncharacterized protein; n=1; ... 36 0.70
UniRef50_A0C1J5 Cluster: Chromosome undetermined scaffold_142, w... 36 0.70
UniRef50_Q9SUM2 Cluster: Probable small nuclear ribonucleoprotei... 36 0.70
UniRef50_Q3LW01 Cluster: MRNA splicing factor; n=1; Bigelowiella... 36 0.93
UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, wh... 36 0.93
UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167, w... 36 0.93
UniRef50_A6R7U2 Cluster: Predicted protein; n=2; Eurotiomycetida... 36 0.93
UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putati... 35 1.2
UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis ... 35 1.2
UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protei... 35 1.2
UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1; ... 35 1.2
UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep: S... 35 1.6
UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Re... 35 1.6
UniRef50_Q24297 Cluster: Small nuclear ribonucleoprotein F; n=7;... 35 1.6
UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm... 35 1.6
UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm... 35 1.6
UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1; Filobas... 34 2.2
UniRef50_A7TII8 Cluster: Putative uncharacterized protein; n=1; ... 34 2.2
UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep... 34 2.2
UniRef50_P34659 Cluster: Probable small nuclear ribonucleoprotei... 34 2.2
UniRef50_Q5CME6 Cluster: Similar to small nuclear ribonucleoprot... 34 2.8
UniRef50_A7AQW8 Cluster: Small nuclear ribonucleoprotein F, puta... 34 2.8
UniRef50_Q8SQK1 Cluster: U6 snRNA-ASSOCIATED RIBONUCLEOPROTEIN; ... 34 2.8
UniRef50_Q3LWL6 Cluster: MRNA splicing protein; n=1; Bigelowiell... 33 3.8
UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep: A... 33 3.8
UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-... 33 5.0
UniRef50_Q8MYW8 Cluster: RE61341p; n=1; Drosophila melanogaster|... 33 5.0
UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm... 33 5.0
UniRef50_A2DQD7 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 33 5.0
UniRef50_Q8SRU9 Cluster: U6 snRNA-ASSOCIATED SMALL RIBONUCLEOPRO... 33 5.0
UniRef50_Q4P8W1 Cluster: Putative uncharacterized protein; n=1; ... 33 5.0
UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria n... 33 5.0
UniRef50_Q0ULJ4 Cluster: Putative uncharacterized protein; n=1; ... 33 5.0
UniRef50_Q9LMB5 Cluster: F14D16.28; n=6; core eudicotyledons|Rep... 33 6.6
UniRef50_Q6FJA6 Cluster: Similar to sp|P47093 Saccharomyces cere... 33 6.6
UniRef50_Q4PB34 Cluster: Putative uncharacterized protein; n=3; ... 33 6.6
UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11; E... 33 6.6
UniRef50_Q9VLV1 Cluster: CG14532-PA; n=1; Drosophila melanogaste... 32 8.7
UniRef50_A2EQ40 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 32 8.7
UniRef50_Q9HPS2 Cluster: SnRNP homolog; n=2; Halobacteriaceae|Re... 32 8.7
UniRef50_Q976F2 Cluster: 90aa long hypothetical small nuclear ri... 32 8.7
>UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotein
G; n=14; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein G - Drosophila melanogaster (Fruit
fly)
Length = 76
Score = 128 bits (308), Expect = 1e-28
Identities = 54/76 (71%), Positives = 69/76 (90%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMV 314
MSKAHPPE+KK+MDK++ +KLN GRAVTG+LRGFDPFMN+VLD++ ECKD +NN+GMV
Sbjct: 1 MSKAHPPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMV 60
Query: 315 VIRGNSIIMLESLHRL 362
VIRGNSI+M+E+L R+
Sbjct: 61 VIRGNSIVMVEALDRV 76
>UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46;
Eukaryota|Rep: Small nuclear ribonucleoprotein G - Homo
sapiens (Human)
Length = 76
Score = 125 bits (302), Expect = 7e-28
Identities = 58/76 (76%), Positives = 65/76 (85%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMV 314
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 315 VIRGNSIIMLESLHRL 362
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>UniRef50_Q9N4G9 Cluster: Probable small nuclear ribonucleoprotein
G; n=16; Bilateria|Rep: Probable small nuclear
ribonucleoprotein G - Caenorhabditis elegans
Length = 77
Score = 105 bits (252), Expect = 8e-22
Identities = 45/76 (59%), Positives = 60/76 (78%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMV 314
MSK HPPELKK+MDK++ +KLN R V+G+LRGFDPFMN+V+DE+ KDG N+GM
Sbjct: 1 MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60
Query: 315 VIRGNSIIMLESLHRL 362
VIRGNS++++E R+
Sbjct: 61 VIRGNSVVIMEPKERI 76
>UniRef50_O74966 Cluster: Probable small nuclear ribonucleoprotein
G; n=7; Ascomycota|Rep: Probable small nuclear
ribonucleoprotein G - Schizosaccharomyces pombe (Fission
yeast)
Length = 77
Score = 88.2 bits (209), Expect = 1e-16
Identities = 38/76 (50%), Positives = 59/76 (77%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMV 314
MSKA P+LKK++D+++ ++LN R V GVLRG+D F+N+VL++S E DG++ +G V
Sbjct: 1 MSKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSV 60
Query: 315 VIRGNSIIMLESLHRL 362
IRGNS+IM+E+L ++
Sbjct: 61 AIRGNSVIMIETLDKM 76
>UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 85
Score = 81.4 bits (192), Expect = 1e-14
Identities = 36/78 (46%), Positives = 52/78 (66%)
Frame = +3
Query: 129 ITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVG 308
+T K P+L K +DKKL+IKLN R V G+LRGFD FMN+ L ++ ++ +G
Sbjct: 1 MTFGKQADPDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIG 60
Query: 309 MVVIRGNSIIMLESLHRL 362
MV+IRGNSI+++E L +
Sbjct: 61 MVIIRGNSILLMEPLESM 78
>UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein
polypeptide G; n=1; Hyacinthus orientalis|Rep: Small
nuclear ribonucleoprotein polypeptide G - Hyacinthus
orientalis (Common hyacinth)
Length = 96
Score = 80.6 bits (190), Expect = 3e-14
Identities = 40/77 (51%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Frame = +3
Query: 126 HITMSKAHPPELKKFMD-KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNN 302
H + PP LK+ KL IKLNA R V G LRGFD FMNLV+D + E +N+
Sbjct: 14 HHAAASGQPPALKQVHGTSKLQIKLNANRVVVGTLRGFDQFMNLVID-NTMEVNGNDKND 72
Query: 303 VGMVVIRGNSIIMLESL 353
+GMVVIRGNS++M+E+L
Sbjct: 73 IGMVVIRGNSVVMIEAL 89
>UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Ostreococcus tauri|Rep: Putative small nuclear
ribonucleoprotein E - Ostreococcus tauri
Length = 101
Score = 77.0 bits (181), Expect = 3e-13
Identities = 33/63 (52%), Positives = 50/63 (79%)
Frame = +3
Query: 165 KFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSIIML 344
++MDKKL ++LN R+VTG+LRGFD F+NLVLD+S + ++ +GMVV+RGNS++ +
Sbjct: 29 RYMDKKLRLRLNGNRSVTGILRGFDQFLNLVLDDSTNDTTT-EKTPMGMVVVRGNSVVSM 87
Query: 345 ESL 353
E+L
Sbjct: 88 EAL 90
>UniRef50_Q8IB57 Cluster: Small nuclear ribonucleoprotein, putative;
n=8; Eukaryota|Rep: Small nuclear ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 83
Score = 76.2 bits (179), Expect = 5e-13
Identities = 39/79 (49%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Frame = +3
Query: 129 ITMSKAHPP-ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNV 305
+T+ KA P + +KFM+K+L I LN R V G+LRG+D FMNLVLD + E K ++ ++
Sbjct: 3 LTVGKAGPASDFRKFMEKRLQIYLNGNRQVVGILRGYDTFMNLVLD-NTMEIKKDEQIDI 61
Query: 306 GMVVIRGNSIIMLESLHRL 362
G+VVIRGNSI E L ++
Sbjct: 62 GVVVIRGNSISYWECLDKV 80
>UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is
associated with small nuclear ribonucleoproteins; n=1;
Aspergillus niger|Rep: Function: snRPG of H. sapiens is
associated with small nuclear ribonucleoproteins -
Aspergillus niger
Length = 105
Score = 75.4 bits (177), Expect = 9e-13
Identities = 32/70 (45%), Positives = 53/70 (75%)
Frame = +3
Query: 138 SKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVV 317
++A+ +++M+K++ +LN R V G+LRG+D FMN+VLDE+ E + G++ +GM+V
Sbjct: 12 TEANIAVFQQYMEKRVFCQLNGNRKVIGILRGYDVFMNIVLDEAFEEKQGGEKVAIGMIV 71
Query: 318 IRGNSIIMLE 347
IRGNS++MLE
Sbjct: 72 IRGNSVVMLE 81
>UniRef50_Q2URY1 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 122
Score = 73.3 bits (172), Expect = 4e-12
Identities = 32/59 (54%), Positives = 46/59 (77%)
Frame = +3
Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSIIMLE 347
M+K++ +LN R V G+LRG+D FMN+VLDE+ E + G++ +GMVVIRGNS++MLE
Sbjct: 1 MEKRVFCQLNGNRKVIGILRGYDVFMNIVLDEAFEEKQGGEKVAIGMVVIRGNSVVMLE 59
>UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 134
Score = 70.9 bits (166), Expect = 2e-11
Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 10/86 (11%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXEC----------K 284
M+K PELK+F+DK++++ + GR + G LRGFD F+NLV+DE+ + +
Sbjct: 48 MAKVSQPELKRFLDKRIAVNIQGGRKIQGTLRGFDMFLNLVVDEAIEQVHPEAGNPNVWQ 107
Query: 285 DGQRNNVGMVVIRGNSIIMLESLHRL 362
DG R G VV+RGNS+ LE+L +
Sbjct: 108 DGDR--CGTVVVRGNSVTSLEALENV 131
>UniRef50_Q6CRN4 Cluster: Similar to sp|P40204 Saccharomyces
cerevisiae YFL017wa SNP2 snRNP G protein; n=1;
Kluyveromyces lactis|Rep: Similar to sp|P40204
Saccharomyces cerevisiae YFL017wa SNP2 snRNP G protein -
Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 71
Score = 66.1 bits (154), Expect = 6e-10
Identities = 30/67 (44%), Positives = 44/67 (65%)
Frame = +3
Query: 162 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSIIM 341
K++MDKKL ++LN R + G+LRG+D F+NLVLD ++G+ V+RGNSI+
Sbjct: 5 KQYMDKKLILQLNGNRKIIGILRGYDAFLNLVLDNPIQIFEEGEVQMGPQTVVRGNSIVS 64
Query: 342 LESLHRL 362
+E L L
Sbjct: 65 IEPLDSL 71
>UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein G;
n=2; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein G - Entamoeba histolytica HM-1:IMSS
Length = 81
Score = 62.5 bits (145), Expect = 7e-09
Identities = 28/69 (40%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECK-DGQRN-NVGMVVIRG 326
PELK +++K++ +K++ R++ GVL G+D +MNLVLDE+ D ++ +GM++I G
Sbjct: 6 PELKHYLEKRILVKIHGKRSIIGVLSGYDEYMNLVLDEAYDASNPDTDKHIPIGMIMILG 65
Query: 327 NSIIMLESL 353
NSI+ +E++
Sbjct: 66 NSILSVETI 74
>UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1;
Filobasidiella neoformans|Rep: U6 snRNA binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 131
Score = 61.7 bits (143), Expect = 1e-08
Identities = 26/63 (41%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQ-RNNVGMVVIRGNSI 335
L +F+DK + +K GR TG+L+G+D MNLV+D+ E +DG+ ++G+VV+RG +I
Sbjct: 29 LAQFVDKSIRVKFMGGREATGILKGYDQLMNLVMDDVVEEYEDGRPTRSLGLVVLRGPNI 88
Query: 336 IML 344
+++
Sbjct: 89 VLV 91
>UniRef50_A6QY75 Cluster: Predicted protein; n=2; Fungi/Metazoa
group|Rep: Predicted protein - Ajellomyces capsulatus
NAm1
Length = 171
Score = 60.1 bits (139), Expect = 4e-08
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRN----NVGMVVIR 323
+L K+M+K++ +K N GR VTG L+G+D MNLVLD+ +D + N ++G++V R
Sbjct: 86 DLTKYMEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVREVMRDDEGNQTTRSLGLIVAR 145
Query: 324 GNSIIML 344
G ++++
Sbjct: 146 GTLLVLI 152
>UniRef50_Q7SDP3 Cluster: Putative uncharacterized protein
NCU01930.1; n=2; Sordariomycetes|Rep: Putative
uncharacterized protein NCU01930.1 - Neurospora crassa
Length = 132
Score = 57.6 bits (133), Expect = 2e-07
Identities = 28/63 (44%), Positives = 42/63 (66%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSI 335
+LKK+MD+++++K N GR VTG L+G+D MNLVLD D Q G+VV RG +
Sbjct: 57 DLKKYMDQRITVKFNGGREVTGTLKGYDALMNLVLD-------DVQEAVRGLVVARGTLL 109
Query: 336 IML 344
+++
Sbjct: 110 VVI 112
>UniRef50_A7TGG5 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 126
Score = 57.2 bits (132), Expect = 3e-07
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 9/72 (12%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKD---------GQRNNVG 308
+L K+ D K+ +KL GR VTGVL+G+DP M LVLDE+ +D Q ++G
Sbjct: 40 DLAKYKDTKIRVKLMGGRLVTGVLKGYDPLMTLVLDETVEYLRDLEDSSIILKDQTRDLG 99
Query: 309 MVVIRGNSIIML 344
+ VIRG ++ L
Sbjct: 100 LTVIRGTVLLSL 111
>UniRef50_A7QWV4 Cluster: Chromosome chr13 scaffold_210, whole
genome shotgun sequence; n=8; Eukaryota|Rep: Chromosome
chr13 scaffold_210, whole genome shotgun sequence -
Vitis vinifera (Grape)
Length = 113
Score = 56.4 bits (130), Expect = 5e-07
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKD--------GQRNNVGM 311
+L KF+DK + +KL GR VTG L+G+D +NLVLDE+ +D Q +G+
Sbjct: 24 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPQKTTDQTRRLGL 83
Query: 312 VVIRGNSIIML 344
+V RG +++++
Sbjct: 84 IVCRGTAVMLV 94
>UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 100
Score = 55.6 bits (128), Expect = 8e-07
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 8/74 (10%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDG--------QRNNVGM 311
+L +F+D+ + +KL+ GR VTG L+G+D +NLVLDE+ +D + +G+
Sbjct: 9 DLARFIDRGVRVKLSGGREVTGTLKGYDQLLNLVLDEAIEHLRDAEDALKISDETRALGL 68
Query: 312 VVIRGNSIIMLESL 353
+V RG S++++ +L
Sbjct: 69 LVCRGTSVMVVSAL 82
>UniRef50_Q4N4E0 Cluster: Small nuclear ribonucleoprotein G,
putative; n=2; Piroplasmida|Rep: Small nuclear
ribonucleoprotein G, putative - Theileria parva
Length = 86
Score = 55.6 bits (128), Expect = 8e-07
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +3
Query: 189 IKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSIIMLESLHRL 362
+ LN R V GVLRG+D FMN+VLD + E + ++G+VV+RGNSI+ E L R+
Sbjct: 27 VHLNGSRHVVGVLRGYDTFMNIVLD-NALEVVGEDQVDLGVVVVRGNSILYWECLDRV 83
>UniRef50_Q9UK45 Cluster: U6 snRNA-associated Sm-like protein LSm7;
n=26; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm7 - Homo sapiens (Human)
Length = 103
Score = 54.8 bits (126), Expect = 1e-06
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKD--------GQRNNVGM 311
+L K++DK + +K GR +G+L+GFDP +NLVLD + +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 312 VVIRGNSIIML 344
VV RG S++++
Sbjct: 74 VVCRGTSVVLI 84
>UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_33,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 104
Score = 54.4 bits (125), Expect = 2e-06
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 17/91 (18%)
Frame = +3
Query: 141 KAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE-------SXXECKDG--- 290
+ + +L K+ K+L IKLNA R + G + GFD FMNLVLD E KD
Sbjct: 12 QGYQADLNKYFGKRLKIKLNAKRTIIGTVIGFDIFMNLVLDHCKELIPGQGAENKDNLYP 71
Query: 291 -------QRNNVGMVVIRGNSIIMLESLHRL 362
Q ++G ++RGNSIIM E L ++
Sbjct: 72 GFSNVTDQLVDIGQAIVRGNSIIMWECLDKV 102
>UniRef50_Q6MY59 Cluster: U6 snrna-associated sm-like protein,
putative (Small nuclear ribonucleoprotein (LSM7),
putative); n=2; Pezizomycotina|Rep: U6 snrna-associated
sm-like protein, putative (Small nuclear
ribonucleoprotein (LSM7), putative) - Aspergillus
fumigatus (Sartorya fumigata)
Length = 134
Score = 54.4 bits (125), Expect = 2e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSI 335
+L K+MDK++ +K N GR V+G+L+G+D MNLVLD+ + N++ + NS
Sbjct: 54 DLSKYMDKEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMRGKSLNDITKLDEVSNSA 113
Query: 336 IML 344
I +
Sbjct: 114 IQM 116
>UniRef50_Q40942 Cluster: Small nucleolar ribonucleoprotein E
homolog; n=2; Bigelowiella natans|Rep: Small nucleolar
ribonucleoprotein E homolog - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 71
Score = 54.0 bits (124), Expect = 2e-06
Identities = 26/71 (36%), Positives = 45/71 (63%)
Frame = +3
Query: 141 KAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVI 320
K + P+LK FM++++ I+L + G LRGFD F+N+VL++S + N ++++
Sbjct: 4 KINIPDLKLFMEEEIQIQLKNKLCLKGTLRGFDQFLNIVLEKSSY---SKESNYFDILIV 60
Query: 321 RGNSIIMLESL 353
RGNSI+ + L
Sbjct: 61 RGNSIMSVSKL 71
>UniRef50_Q4Q5H5 Cluster: Small nuclear ribonucleoprotein, putative;
n=5; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 81
Score = 53.6 bits (123), Expect = 3e-06
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDG-----QRNNVGMVV 317
P L FM+K++ +K+ GR+++GVLRG D M++VL ++ E ++ R +G V
Sbjct: 8 PNLNHFMEKRIVVKIQGGRSISGVLRGVDEHMSIVLHDAMDETRNAAVSEEARLALGTTV 67
Query: 318 IRGNSIIMLES 350
IRG++I+ + S
Sbjct: 68 IRGSAIVEIVS 78
>UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative;
n=2; Theileria|Rep: U6 snRNA-associated protein,
putative - Theileria parva
Length = 104
Score = 53.2 bits (122), Expect = 4e-06
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKD--------GQRNNVGMV 314
L K ++K++ +K + GR V GVLRG D NLVLD++ KD G++ N+G++
Sbjct: 17 LNKHLNKEVYVKFSGGREVKGVLRGHDAMSNLVLDDTVEYLKDSSDSSKLTGEKRNLGLL 76
Query: 315 VIRGNSIIML 344
V RG S+ ++
Sbjct: 77 VARGTSVTVV 86
>UniRef50_O74499 Cluster: U6 snRNP-associated protein Lsm7; n=19;
Eukaryota|Rep: U6 snRNP-associated protein Lsm7 -
Schizosaccharomyces pombe (Fission yeast)
Length = 113
Score = 52.8 bits (121), Expect = 6e-06
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 7/70 (10%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKD-------GQRNNVGMV 314
+L ++ D+++ GR +TG+L+GFD MNLVLD+ + ++ G +G+V
Sbjct: 27 DLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLV 86
Query: 315 VIRGNSIIML 344
V+RG +++++
Sbjct: 87 VVRGTTLVLI 96
>UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 80
Score = 51.6 bits (118), Expect = 1e-05
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Frame = +3
Query: 129 ITMSKAHPPELKKFMDKK-LSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNV 305
I M+K L + ++++ + I L GR + GVL+G+D MNLVLD++ E GQ ++
Sbjct: 4 IDMTKRPMDILDQVLNRQPVLISLKGGREIKGVLQGYDVHMNLVLDKA-EEIVQGQAQSI 62
Query: 306 GMVVIRGNSIIML 344
G ++IRG+++I +
Sbjct: 63 GTLIIRGDNVIYI 75
>UniRef50_A2GMH6 Cluster: Sm protein; n=3; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 81
Score = 51.2 bits (117), Expect = 2e-05
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Frame = +3
Query: 129 ITMSKAHPP--ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECK-DGQRN 299
+ M++A PP ELK + KK+ I N R V+G+L GFD FMNL + ++ + D
Sbjct: 3 VQMTQAQPPYPELKGHLQKKVKIMSNKDREVSGILTGFDHFMNLTIRDAQIKTPYDKAPV 62
Query: 300 NVGMVVIRGNSIIMLESLH 356
VIRG I+ +E+L+
Sbjct: 63 FCNSCVIRGTMILSVETLN 81
>UniRef50_Q4Z0C4 Cluster: U6 snRNA-associated Sm-like protein,
putative; n=4; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein, putative - Plasmodium berghei
Length = 108
Score = 50.4 bits (115), Expect = 3e-05
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKD--------GQRNNVGM 311
++KKFM++K+ +K + GR V G L G D NLVLD++ +D + N+G+
Sbjct: 20 DIKKFMNQKIRVKFDGGREVVGNLIGHDAIFNLVLDKTEEFIRDPNDSYVITEKSRNIGL 79
Query: 312 VVIRGNSIIML 344
+V RG S+ ++
Sbjct: 80 IVARGTSVALI 90
>UniRef50_Q5CY65 Cluster: Putative uncharacterized protein; n=1;
Cryptosporidium parvum Iowa II|Rep: Putative
uncharacterized protein - Cryptosporidium parvum Iowa II
Length = 73
Score = 50.0 bits (114), Expect = 4e-05
Identities = 25/52 (48%), Positives = 32/52 (61%)
Frame = +3
Query: 114 YFKKHITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDES 269
Y +I MS L KF +K++ +KL GR V G+LRGFD NLVLDE+
Sbjct: 9 YLSFNIEMSSKSILGLNKFNNKEIKVKLCGGREVIGILRGFDAVTNLVLDET 60
>UniRef50_UPI0000D9E97B Cluster: PREDICTED: LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae); n=1; Macaca
mulatta|Rep: PREDICTED: LSM7 homolog, U6 small nuclear
RNA associated (S. cerevisiae) - Macaca mulatta
Length = 123
Score = 49.6 bits (113), Expect = 5e-05
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKD 287
+L K++DK + +K GR +G+L+GFDP +NLVLD + +D
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRD 57
>UniRef50_P53905 Cluster: U6 snRNA-associated Sm-like protein LSm7;
n=6; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm7 - Saccharomyces cerevisiae (Baker's yeast)
Length = 115
Score = 49.6 bits (113), Expect = 5e-05
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL-----------DESXXECKDGQRNN 302
+L K+ D K+ +KL G+ V GVL+G+D MNLVL DE+ E
Sbjct: 29 DLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARK 88
Query: 303 VGMVVIRGNSIIMLES 350
+G+ VIRG ++ L S
Sbjct: 89 LGLTVIRGTILVSLSS 104
>UniRef50_A4VCU1 Cluster: Small nuclear ribonucleoprotein E,
putative; n=1; Tetrahymena thermophila SB210|Rep: Small
nuclear ribonucleoprotein E, putative - Tetrahymena
thermophila SB210
Length = 140
Score = 48.8 bits (111), Expect = 9e-05
Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Frame = +3
Query: 168 FMDKKLSIKL----NAGRAVTGVLRGFDPFMNLVLDE-SXXECKDGQRNNVGMVVIRGNS 332
F+ K++ +++ N + G + GFD +MN+VLDE S +CK Q+ +G ++++G +
Sbjct: 19 FLQKQVRVQIWLFENTEIKLEGKIIGFDEYMNMVLDETSEVDCKTNQKREIGRILLKGEN 78
Query: 333 IIMLESLHRL 362
I ++ +L +L
Sbjct: 79 ITLIRNLEQL 88
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 48.8 bits (111), Expect = 9e-05
Identities = 21/62 (33%), Positives = 39/62 (62%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSII 338
L + +++ + IKL + + G L GFD MNL+LD S +G+ +G +V+RG++++
Sbjct: 10 LDESINQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAEGEAKGLGSIVVRGDNVV 69
Query: 339 ML 344
M+
Sbjct: 70 MI 71
>UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog;
n=4; Pyrobaculum|Rep: Small nuclear ribonucleoprotein
homolog - Pyrobaculum aerophilum
Length = 85
Score = 48.0 bits (109), Expect = 2e-04
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQ-RNNVGMVVIRGNSI 335
L K ++K++ +L G AV GVL +D MNLVL+++ K G+ + G +VIRG+ +
Sbjct: 16 LTKMLNKEIIARLKGGVAVKGVLTAYDGCMNLVLNDAAELDKSGEPKTRYGRIVIRGSQV 75
Query: 336 IMLES 350
I + +
Sbjct: 76 IYVST 80
>UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4;
Thermoplasmatales|Rep: Small nuclear ribonucleoprotein -
Thermoplasma volcanium
Length = 71
Score = 46.8 bits (106), Expect = 4e-04
Identities = 21/62 (33%), Positives = 40/62 (64%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSII 338
L++ ++K++S+ L R + G L G+D +MN+VLD+ E + +G VVIRG++++
Sbjct: 8 LEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDD-VDENSENVSRKLGTVVIRGSNVV 66
Query: 339 ML 344
+
Sbjct: 67 RI 68
>UniRef50_A7PDU1 Cluster: Chromosome chr11 scaffold_13, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr11 scaffold_13, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 242
Score = 46.4 bits (105), Expect = 5e-04
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQ---RNNVGMVVIRGN 329
L ++DKKL + L GR + GVLR FD F N VL+ + G +G+ VIRG
Sbjct: 15 LASYLDKKLLVLLRDGRKLLGVLRSFDQFANAVLEGACERAIVGDIYCDIPLGLYVIRGE 74
Query: 330 SIIMLESL 353
++++L L
Sbjct: 75 NVVLLGEL 82
Score = 39.1 bits (87), Expect = 0.076
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +3
Query: 177 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQ---RNNVGMVVIRGNSIIMLE 347
+KL + L GR + GVLR FD F N VL+ + G +G+ VIRG ++++L
Sbjct: 135 EKLLVLLRDGRKLLGVLRSFDQFANAVLEGACERAIVGDIYCDIPLGLYVIRGENVVLLG 194
Query: 348 SL 353
L
Sbjct: 195 EL 196
>UniRef50_Q4Q9J1 Cluster: Lsm7p protein, putative; n=6;
Trypanosomatidae|Rep: Lsm7p protein, putative -
Leishmania major
Length = 91
Score = 46.4 bits (105), Expect = 5e-04
Identities = 25/75 (33%), Positives = 41/75 (54%)
Frame = +3
Query: 126 HITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNV 305
HI K L+K++D+K+ + G V GVL+GFD +NLVL ++ +D +
Sbjct: 7 HILKKKEGILSLEKYLDRKIVVS-QKGHEVHGVLKGFDNNVNLVLADAELWHRDTHVRKI 65
Query: 306 GMVVIRGNSIIMLES 350
G V+RG + ++ S
Sbjct: 66 GACVVRGGPVNLILS 80
>UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 129
Score = 44.8 bits (101), Expect = 0.002
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Frame = +3
Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDG---QRNNVGMVVIRGNSIIM 341
+DKKL + L GR G++R FD F N+VL ++ G N+G+ IRG+++++
Sbjct: 9 VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVI 68
Query: 342 L 344
L
Sbjct: 69 L 69
>UniRef50_A3H6D3 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Caldivirga maquilingensis IC-167|Rep: Like-Sm
ribonucleoprotein, core - Caldivirga maquilingensis
IC-167
Length = 86
Score = 44.8 bits (101), Expect = 0.002
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNV----GMVVIRG 326
L ++K + +KL AGR ++G LR D MN+VLD++ E D + N V G V+IRG
Sbjct: 16 LGMMVNKSVVVKLKAGRVLSGTLRFIDQCMNIVLDDA--EELDTRTNQVIVRYGKVLIRG 73
Query: 327 NSIIMLESLHRL 362
N ++ + + L
Sbjct: 74 NQVLYVSVRNEL 85
>UniRef50_Q6BPZ2 Cluster: Debaryomyces hansenii chromosome E of
strain CBS767 of Debaryomyces hansenii; n=1;
Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome E of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 78
Score = 44.0 bits (99), Expect = 0.003
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE 266
+L + DK++ +K GR V GVL+GFD MNLVL++
Sbjct: 34 DLNNYKDKQIRVKFIGGRQVIGVLKGFDQLMNLVLED 70
>UniRef50_Q9UUI1 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=33; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm6 - Schizosaccharomyces pombe (Fission yeast)
Length = 75
Score = 44.0 bits (99), Expect = 0.003
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNV-GMVVIRGNSI 335
L K + KK+ I+L++G G+L D +MNL L E E +G++ NV G IRGN++
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLAL-ERTEEYVNGKKTNVYGDAFIRGNNV 67
Query: 336 IMLESL 353
+ + +L
Sbjct: 68 LYVSAL 73
>UniRef50_P62312 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=22; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm6 - Homo sapiens (Human)
Length = 80
Score = 44.0 bits (99), Expect = 0.003
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +3
Query: 129 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNV 305
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L+++ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 60
Query: 306 GMVVIRGNSIIMLESLHR 359
G IRGN+++ + + R
Sbjct: 61 GDAFIRGNNVLYISTQKR 78
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 43.2 bits (97), Expect = 0.005
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +3
Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQ-RNNVGMVVIRGNSIIML 344
++ + IKL R GVL+ FD MNLVL+++ E +DG+ +G V+IRG++I+ +
Sbjct: 22 LNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDA-EELEDGEVTRRLGTVLIRGDNIVYI 79
>UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)
homolog; n=1; Methanopyrus kandleri|Rep: Small nuclear
ribonucleoprotein (SnRNP) homolog - Methanopyrus
kandleri
Length = 73
Score = 42.7 bits (96), Expect = 0.006
Identities = 21/62 (33%), Positives = 37/62 (59%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSII 338
L+ F+D + ++L G+ + G L FD +NLVLD+ E + +G V+IRG+S+
Sbjct: 7 LRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDDC-VEIDEDSEVRLGRVLIRGDSVT 65
Query: 339 ML 344
++
Sbjct: 66 LI 67
>UniRef50_A2Y859 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 141
Score = 42.3 bits (95), Expect = 0.008
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDES 269
P L+ +D+ +S+ N GR + G LRGFD N++LDES
Sbjct: 6 PGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDES 44
>UniRef50_Q4PA95 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 148
Score = 42.3 bits (95), Expect = 0.008
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Frame = +3
Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQR-NNV--GMVVIRGNSIIM 341
+DKK+ + L G+ + GVLR +D F NLVL ++ G R +V G+ ++RG ++++
Sbjct: 22 VDKKMLVVLRDGKKLIGVLRSYDQFANLVLQDTVERVFVGNRYGDVARGIFLVRGENVVL 81
Query: 342 L 344
+
Sbjct: 82 M 82
>UniRef50_Q01J34 Cluster: OSIGBa0140O07.9 protein; n=5; Oryza
sativa|Rep: OSIGBa0140O07.9 protein - Oryza sativa
(Rice)
Length = 136
Score = 41.9 bits (94), Expect = 0.011
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRN---NVGMVVIRGN 329
L F+DKKL + L GR + G L FD F N+VL + G+ +G+ VIRG
Sbjct: 16 LAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGELYCDVPLGLYVIRGE 75
Query: 330 SIIMLESL 353
+++++ L
Sbjct: 76 NVVLIGEL 83
>UniRef50_Q8SRW7 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN G; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN G - Encephalitozoon cuniculi
Length = 78
Score = 41.9 bits (94), Expect = 0.011
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE 266
M K+ P L + K++ +++ G + G+L G+D FMN+VL E
Sbjct: 1 MGKSAVPNLASLLHKRIVVRIGGGHTLKGLLTGYDAFMNIVLSE 44
>UniRef50_Q6DBW5 Cluster: Zgc:101136; n=6; Euteleostomi|Rep:
Zgc:101136 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 133
Score = 41.5 bits (93), Expect = 0.014
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Frame = +3
Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQR-NNV--GMVVIRGNSIIM 341
+DKK + L GR + G+LR D F NLVL ++ G++ ++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGILRSIDQFANLVLHQTVERIHVGKKFGDIPRGIFVVRGENVVL 73
Query: 342 L 344
L
Sbjct: 74 L 74
>UniRef50_A4S5K5 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 126
Score = 41.1 bits (92), Expect = 0.019
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Frame = +3
Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNN---VGMVVIRGNSIIM 341
+DK+L + L G + G LR FD F N+VL+ + G+ + +G+ ++RG ++++
Sbjct: 17 LDKRLLVALRDGSNIIGTLRSFDQFANIVLESAVERIIVGKMFSDIPLGLYIVRGENVVL 76
Query: 342 L 344
+
Sbjct: 77 M 77
>UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog;
n=5; Thermoproteaceae|Rep: Small nuclear
ribonucleoprotein homolog - Pyrobaculum aerophilum
Length = 80
Score = 41.1 bits (92), Expect = 0.019
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSII 338
L+ + K++ +KL + G+LR FD +NL+L E E DG G +V+RG +++
Sbjct: 16 LQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLL-EDAEEIIDGNVYKRGTMVVRGENVL 74
Query: 339 ML 344
+
Sbjct: 75 FI 76
>UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=1; Schizosaccharomyces pombe|Rep: U6 snRNA-associated
Sm-like protein LSm8 - Schizosaccharomyces pombe
(Fission yeast)
Length = 94
Score = 41.1 bits (92), Expect = 0.019
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXEC----KDGQRNNVGMVVIRG 326
L FM++++ + N GR V G L+GFD NL+L +S +D + +G+ ++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 327 NSIIML 344
++ M+
Sbjct: 63 ENVAMV 68
>UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11;
Saccharomycetales|Rep: Sm-like protein LSm1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 172
Score = 41.1 bits (92), Expect = 0.019
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Frame = +3
Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNV-----GMVVIRGNSI 335
+D+K+ + L GR + GVLR FD + NL+L + + N G+ +IRG ++
Sbjct: 50 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGENV 109
Query: 336 IML 344
+ML
Sbjct: 110 VML 112
>UniRef50_Q98S49 Cluster: Small nuclear ribonucleoprotein F; n=1;
Guillardia theta|Rep: Small nuclear ribonucleoprotein F
- Guillardia theta (Cryptomonas phi)
Length = 73
Score = 40.7 bits (91), Expect = 0.025
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +3
Query: 174 DKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSIIML 344
+K + +KL G + TG+ G D +MN++LD + +G+V+IR N+I+ +
Sbjct: 12 NKNVFVKLKWGSSYTGIFIGSDNYMNIILDSCSEVITEQNLGFLGLVLIRCNNILFI 68
>UniRef50_Q1HQ51 Cluster: LSM1-like protein; n=3; Endopterygota|Rep:
LSM1-like protein - Bombyx mori (Silk moth)
Length = 138
Score = 40.7 bits (91), Expect = 0.025
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +3
Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNN---VGMVVIRGNSIIM 341
+DKKL + L GR + G LR D F NLVL ++ G+ G+ ++RG ++++
Sbjct: 18 LDKKLMVLLRDGRTLIGYLRCVDQFANLVLHKTIERIHVGKEYGDIPRGIFIVRGENVVL 77
Query: 342 LESLHR 359
L + +
Sbjct: 78 LGEIDK 83
>UniRef50_A1DH91 Cluster: Small nuclear ribonucleoprotein (LSM1),
putative; n=11; Pezizomycotina|Rep: Small nuclear
ribonucleoprotein (LSM1), putative - Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 177
Score = 40.7 bits (91), Expect = 0.025
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRN---NVGMVVIRG 326
+L DKKL + L GR + GVLR +D F NLVL ++ G G+ ++RG
Sbjct: 52 QLLDLTDKKLVLVLRDGRKLIGVLRSWDQFANLVLQDTIERLYAGNLYADIPRGIFLVRG 111
Query: 327 NSIIML 344
++++L
Sbjct: 112 ENVLLL 117
>UniRef50_P87173 Cluster: Uncharacterized protein C3D6.08c; n=1;
Schizosaccharomyces pombe|Rep: Uncharacterized protein
C3D6.08c - Schizosaccharomyces pombe (Fission yeast)
Length = 140
Score = 40.7 bits (91), Expect = 0.025
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXEC-KDGQRNNV--GMVVIRGN 329
L ++D+K+ + L G+ + G+LR FD F NL+L + D ++ G+ ++RG
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGE 75
Query: 330 SIIMLESL 353
++++L L
Sbjct: 76 NVVLLGEL 83
>UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=23; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm8 - Homo sapiens (Human)
Length = 96
Score = 40.7 bits (91), Expect = 0.025
Identities = 17/66 (25%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDES----XXECKDGQRNNVGMVVIRG 326
L+ ++++ +++ + GR + G L+GFD +NL+LDES + ++ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 327 NSIIML 344
+++ ++
Sbjct: 65 DNVAVI 70
>UniRef50_Q9AVY1 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Guillardia theta|Rep: Putative small nuclear
ribonucleoprotein E - Guillardia theta (Cryptomonas phi)
Length = 78
Score = 40.3 bits (90), Expect = 0.033
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = +3
Query: 219 GVLRGFDPFMNLVLDESXXECKDGQ-RNNVGMVVIRGNSIIMLESLH 356
G L GFD FMNLV+ E+ E KD ++G V+I+G+SI+ + S+H
Sbjct: 32 GNLIGFDEFMNLVI-ENTTEKKDSLIVRDLGYVLIKGDSILTISSIH 77
>UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albicans
CaLSM6; n=3; Ascomycota|Rep: Similar to CA5853|CaLSM6
Candida albicans CaLSM6 - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 84
Score = 40.3 bits (90), Expect = 0.033
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNS 332
L + + ++++L+ G G L+ D +MN+VLDE+ Q N G V IRGN+
Sbjct: 21 LSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQARNYGDVFIRGNN 78
>UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4;
Thermoplasmatales|Rep: Putative snRNP Sm-like protein -
Thermoplasma acidophilum
Length = 83
Score = 40.3 bits (90), Expect = 0.033
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNV-GMVVIRGNSI 335
LK + + + I + R +G+L G+D +MN+VL ++ E +G+ V V++RG+++
Sbjct: 14 LKSALSRNVLIDVKGNREYSGILEGYDVYMNIVL-QNASEIINGENKGVYDRVLVRGDNV 72
Query: 336 IML 344
I +
Sbjct: 73 IFV 75
>UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10;
Archaea|Rep: Putative snRNP Sm-like protein -
Archaeoglobus fulgidus
Length = 77
Score = 40.3 bits (90), Expect = 0.033
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQ-RNNVGMVVIRGNSI 335
L + + + ++L GR G L G+D MNLVL ++ E ++G+ VG VVIRG+++
Sbjct: 9 LNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDA-EEIQNGEVVRKVGSVVIRGDTV 67
Query: 336 IML 344
+ +
Sbjct: 68 VFV 70
>UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1;
Aeropyrum pernix|Rep: Putative snRNP Sm-like protein -
Aeropyrum pernix
Length = 77
Score = 40.3 bits (90), Expect = 0.033
Identities = 15/59 (25%), Positives = 38/59 (64%)
Frame = +3
Query: 168 FMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSIIML 344
++D + +KL +G + GVL+ +D +N++L ++ E + +G+ ++RG+S++++
Sbjct: 16 YVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDA-EEIGETSIRRLGLTLVRGDSVVVI 73
>UniRef50_O75243 Cluster: R30783_1; n=3; Mammalia|Rep: R30783_1 -
Homo sapiens (Human)
Length = 145
Score = 39.9 bits (89), Expect = 0.043
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Frame = +3
Query: 204 GRAVTGVLRGFDPFMNLVLDESXXECKD--------GQRNNVGMVVIRGNSIIML 344
GR +G+L+GFDP +NLVLD + +D +G+VV RG S++++
Sbjct: 72 GRPRSGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLI 126
>UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Homo
sapiens (Human)
Length = 92
Score = 39.9 bits (89), Expect = 0.043
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 213 VTGVLRGFDPFMNLVLDES-XXECKDGQRNNVGMVVIRGNSIIMLESL 353
+ G + GFD +MNLVLD++ K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>UniRef50_O15116 Cluster: U6 snRNA-associated Sm-like protein LSm1;
n=23; Eumetazoa|Rep: U6 snRNA-associated Sm-like protein
LSm1 - Homo sapiens (Human)
Length = 133
Score = 39.9 bits (89), Expect = 0.043
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +3
Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNN---VGMVVIRGNSIIM 341
+DKK + L GR + G LR D F NLVL ++ G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 342 L 344
L
Sbjct: 74 L 74
>UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albicans
CaSMX4 U6 snRNA-associated Sm-like protein; n=2;
Saccharomycetaceae|Rep: Similar to CA3420|CaSMX4 Candida
albicans CaSMX4 U6 snRNA-associated Sm-like protein -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 88
Score = 39.5 bits (88), Expect = 0.057
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Frame = +3
Query: 150 PPELKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD---ESXXECKDGQR---NNVG 308
P +L ++ +D+ + +KL R + G L+G+D N++L E + +GQ N
Sbjct: 13 PLDLVRYQLDELVLVKLRGAREMKGKLQGYDSHCNMILSDAVEYIYDVPEGQEPVTKNTD 72
Query: 309 MVVIRGNSIIMLESLH 356
MV +RG+S+I++ ++
Sbjct: 73 MVFVRGDSVILISPVN 88
>UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Danio
rerio (Zebrafish) (Brachydanio rerio)
Length = 92
Score = 39.1 bits (87), Expect = 0.076
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 213 VTGVLRGFDPFMNLVLDES-XXECKDGQRNNVGMVVIRGNSIIMLESL 353
+ G + GFD +MNLVLD++ K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 90
>UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein,
putative; n=3; Piroplasmida|Rep: (U6) snRNA-associated
Sm-like protein, putative - Theileria annulata
Length = 90
Score = 38.7 bits (86), Expect = 0.100
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SXXECKDG-QRNNVGMVVIRGN 329
+ K + K+ I + + +TG LRGFD +MN+VL++ DG + + ++ GN
Sbjct: 16 IDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSADGVKTTELNDALVNGN 75
Query: 330 SIIML 344
++ ML
Sbjct: 76 NVAML 80
>UniRef50_A1CE19 Cluster: LSM domain protein; n=3;
Trichocomaceae|Rep: LSM domain protein - Aspergillus
clavatus
Length = 108
Score = 38.7 bits (86), Expect = 0.100
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQ-RNNVGMVVIRGNS 332
L + + +++KLN+G G L+ D +MN+ L++S E DG+ R + G IRGN+
Sbjct: 15 LSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQS-KEFMDGKLRRSYGDAFIRGNN 72
>UniRef50_A3DMZ9 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Staphylothermus marinus F1|Rep: Like-Sm
ribonucleoprotein, core - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 149
Score = 38.7 bits (86), Expect = 0.100
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 129 ITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFD-PFMNLVLDESXXECKDGQRNNV 305
I S+ EL +DKK+ + L GR G+L GFD P +N++L+ + D + N
Sbjct: 4 IDASRRLAAELAGLVDKKVKVILADGRFYEGILTGFDHPSLNILLENAV----DNKGNKY 59
Query: 306 GMVVIRGNSI 335
V+I+G I
Sbjct: 60 PKVIIKGERI 69
>UniRef50_Q4V6D7 Cluster: IP05148p; n=2; Drosophila
melanogaster|Rep: IP05148p - Drosophila melanogaster
(Fruit fly)
Length = 99
Score = 38.3 bits (85), Expect = 0.13
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +3
Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQR 296
+DKKL + L GR + G LR D F NLVL + GQR
Sbjct: 34 VDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIERIPCGQR 75
>UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_122_3813_3433 - Giardia lamblia ATCC
50803
Length = 126
Score = 37.9 bits (84), Expect = 0.17
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSII 338
LK ++ ++S+ L ++TG+L FD MNL+L + E ++VIRG+SII
Sbjct: 57 LKTSLEDRVSVLLQNNSSITGLLASFDEHMNLIL-INAEETGHSLNRFFPLLVIRGDSII 115
Query: 339 ML 344
+
Sbjct: 116 FV 117
>UniRef50_Q5CQ90 Cluster: Small nuclear ribonucleoprotein U6; n=1;
Cryptosporidium parvum Iowa II|Rep: Small nuclear
ribonucleoprotein U6 - Cryptosporidium parvum Iowa II
Length = 160
Score = 37.5 bits (83), Expect = 0.23
Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNN---VGMVVIRGN 329
L++ +DK++ + L GR TG+ R FD + +L L+ S + N G ++ RG+
Sbjct: 46 LEEDLDKEIYVVLRDGRQFTGIFRSFDQYGSLCLERSFEVFSNNDCYNEIYQGCMIFRGD 105
Query: 330 SIIMLESLHRL*XTYSGQEI 389
++++ + + +Y+ ++I
Sbjct: 106 NLMLCGLIDQNIKSYNAKKI 125
>UniRef50_Q4MZX3 Cluster: Small nuclear ribonucleoprotein, putative;
n=2; Theileria|Rep: Small nuclear ribonucleoprotein,
putative - Theileria parva
Length = 91
Score = 37.5 bits (83), Expect = 0.23
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +3
Query: 213 VTGVLRGFDPFMNLVLDESX-XECKDGQRNNVGMVVIRGNSIIMLES 350
+ G +RGFD +MN+VLD + K + +VG ++++G+ + ++ +
Sbjct: 41 IEGTIRGFDEYMNMVLDNATEVHVKKNVKKDVGRILLKGDCMTLISA 87
>UniRef50_Q5K712 Cluster: U6 snRNA-associated sm-like protein lsm6,
putative; n=1; Filobasidiella neoformans|Rep: U6
snRNA-associated sm-like protein lsm6, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 88
Score = 37.5 bits (83), Expect = 0.23
Identities = 16/68 (23%), Positives = 38/68 (55%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSII 338
L+ + K++ +++ +G TG+L D +MN+ L+++ + + G +RGN+++
Sbjct: 21 LRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKTAAYGDCFLRGNNVL 80
Query: 339 MLESLHRL 362
+ +L L
Sbjct: 81 YISALEDL 88
>UniRef50_A3LX11 Cluster: Predicted protein; n=3;
Saccharomycetaceae|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 92
Score = 37.5 bits (83), Expect = 0.23
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 135 MSKAHPPELK--KFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKD 287
M+ A P L +F+ L + + GR VTG+L DPF NL+L E +D
Sbjct: 1 MASASNPSLTPDQFIGSNLRVAIKDGRVVTGILTVIDPFGNLLLSNVIEESED 53
>UniRef50_O29885 Cluster: SnRNP, putative; n=1; Archaeoglobus
fulgidus|Rep: SnRNP, putative - Archaeoglobus fulgidus
Length = 75
Score = 37.5 bits (83), Expect = 0.23
Identities = 18/65 (27%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGR-AVTGVLRGFDPFMNLVLDESXXECKDGQR-NNVGMVVIRGNS 332
+K + K + +++ + G L G D +MNL L + ECK ++ ++G +V+RGN+
Sbjct: 8 VKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAM-ECKGEEKVRSLGEIVLRGNN 66
Query: 333 IIMLE 347
+++++
Sbjct: 67 VVLIQ 71
>UniRef50_Q98RT8 Cluster: Small nucleolar ribonucleoprotein G; n=1;
Guillardia theta|Rep: Small nucleolar ribonucleoprotein
G - Guillardia theta (Cryptomonas phi)
Length = 74
Score = 37.1 bits (82), Expect = 0.30
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSI 335
E+ F+ KK+++ L + G L GFD F N+V+ ++ + ++ N + V+IRG+S+
Sbjct: 9 EISNFIQKKVNVILINQINLKGTLVGFDNFSNIVIKKNQVKQENCFINEI--VLIRGDSL 66
Query: 336 IMLE 347
+ +E
Sbjct: 67 VSIE 70
>UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm;
n=1; Aeropyrum pernix|Rep: Putative small nucleolar RNP
protein Sm - Aeropyrum pernix
Length = 94
Score = 37.1 bits (82), Expect = 0.30
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQR--NNVGMVVIRGNS 332
LK+ ++ ++ +KL G G L D MNL+LD++ +G R +G V+I+G+
Sbjct: 16 LKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIEVADNGTRLVAKIGRVLIKGSM 75
Query: 333 I 335
+
Sbjct: 76 V 76
>UniRef50_Q9Y4Y9 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=27; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm5 - Homo sapiens (Human)
Length = 91
Score = 37.1 bits (82), Expect = 0.30
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Frame = +3
Query: 138 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SXXECKDGQR-NNV 305
S+ P EL K + ++ I + + + + G L GFD F+N+VL++ +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 306 GMVVIRGNSIIML 344
+++ GN+I ML
Sbjct: 70 DQILLNGNNITML 82
>UniRef50_Q20229 Cluster: Putative uncharacterized protein lsm-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein lsm-1 - Caenorhabditis elegans
Length = 125
Score = 36.7 bits (81), Expect = 0.40
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Frame = +3
Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXE-------CKDGQRNNVGMVVIRGN 329
+DKKL + L GR + G LR D F NL+L++ C+ GQ G ++IRG
Sbjct: 18 LDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ----GFMLIRGE 73
Query: 330 SI 335
++
Sbjct: 74 NV 75
>UniRef50_Q6CGS0 Cluster: Similar to sp|P47017 Saccharomyces
cerevisiae YJL124c LSM1 Sm-like; n=1; Yarrowia
lipolytica|Rep: Similar to sp|P47017 Saccharomyces
cerevisiae YJL124c LSM1 Sm-like - Yarrowia lipolytica
(Candida lipolytica)
Length = 144
Score = 36.7 bits (81), Expect = 0.40
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDES 269
+D+K+ + L GR G+LR FD F NLVL ++
Sbjct: 24 IDRKVVVTLRGGRKFFGILRSFDQFANLVLQDT 56
>UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE,
putative; n=12; Pezizomycotina|Rep: Small nuclear
ribonucleoprotein SmE, putative - Aspergillus clavatus
Length = 95
Score = 36.7 bits (81), Expect = 0.40
Identities = 14/52 (26%), Positives = 35/52 (67%), Gaps = 5/52 (9%)
Frame = +3
Query: 213 VTGVLRGFDPFMNLVLDES-----XXECKDGQRNNVGMVVIRGNSIIMLESL 353
+ G +RGFD FMNLV+D++ + + +R +G ++++G+++ +++++
Sbjct: 43 IEGKIRGFDEFMNLVVDDAVEVRMATKTDEEKRRPLGQILLKGDNVSLIQAV 94
>UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associated
protein B; n=4; Saccharomycetales|Rep: Small nuclear
ribonucleoprotein-associated protein B - Saccharomyces
cerevisiae (Baker's yeast)
Length = 196
Score = 36.7 bits (81), Expect = 0.40
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = +3
Query: 144 AHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXE 278
AH L +D KL + GR G L FD MNLVL+E E
Sbjct: 7 AHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEE 51
>UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein - Entamoeba histolytica HM-1:IMSS
Length = 89
Score = 36.3 bits (80), Expect = 0.53
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 198 NAGRAVTGVLRGFDPFMNLVL-DESXXECKDGQRNNVGMVVIRGNSIIMLESL 353
N + G L GFD ++NLVL D K R +G ++++G +I ++ +
Sbjct: 34 NTALRIEGTLSGFDQYINLVLTDTEEVYLKTNTRRKIGTILLKGENISVISKI 86
>UniRef50_Q2R066 Cluster: Small nuclear ribonucleoprotein F,
putative, expressed; n=5; Oryza sativa|Rep: Small
nuclear ribonucleoprotein F, putative, expressed - Oryza
sativa subsp. japonica (Rice)
Length = 86
Score = 36.3 bits (80), Expect = 0.53
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQ-RNNVGMVVIRGN 329
P L K + +KL G G L D +MNL L + E DGQ N+G ++IR N
Sbjct: 10 PFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQL-ANTEEYIDGQFSGNLGEILIRCN 68
Query: 330 SIIMLESL 353
+++ L +
Sbjct: 69 NVLYLRGV 76
>UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 141
Score = 36.3 bits (80), Expect = 0.53
Identities = 15/40 (37%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = +3
Query: 228 RGFDPFMNLVLDES-XXECKDGQRNNVGMVVIRGNSIIML 344
+GFD +MNLVLDE+ K R ++G ++++G++I ++
Sbjct: 97 KGFDEYMNLVLDEAEEINIKKDTRKSLGRILLKGDNITLM 136
>UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core,
putative; n=2; Culicidae|Rep: Small nuclear
ribonucleoprotein, core, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 162
Score = 36.3 bits (80), Expect = 0.53
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDG----QRNNVGMVVIRG 326
L+ +++ +SI GR G L+GFD +N++LDES ++ +G+ +IRG
Sbjct: 71 LESYVNTTVSIITADGRNFVGTLKGFDQTINIILDESHERVYSMNAGIEQVVLGLHIIRG 130
Query: 327 NSIIMLESL 353
+++ ++ L
Sbjct: 131 DNVAVIGQL 139
>UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=2; Pezizomycotina|Rep: U6 snRNA-associated Sm-like
protein LSm6 - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 83
Score = 36.3 bits (80), Expect = 0.53
Identities = 15/62 (24%), Positives = 35/62 (56%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSII 338
L + + +++KLN+G G L+ D +MN+ L+++ ++ + G +RGN+++
Sbjct: 18 LGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVRGNNVM 77
Query: 339 ML 344
+
Sbjct: 78 YI 79
>UniRef50_Q4JAY5 Cluster: Conserved Archaeal protein; n=4;
Sulfolobaceae|Rep: Conserved Archaeal protein -
Sulfolobus acidocaldarius
Length = 144
Score = 36.3 bits (80), Expect = 0.53
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 129 ITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFD--PFMNLVLDESXXECKDGQRNN 302
+++S+ +L +DK + +KLN + +GVL F+ PFM +L+ KD N
Sbjct: 1 MSVSRRISGDLGSLLDKTIIVKLNNNKVYSGVLSSFEVSPFMVSLLN-----AKDNDNNM 55
Query: 303 VGMVVIRGNSI 335
V+I GN I
Sbjct: 56 YYKVIINGNMI 66
>UniRef50_Q2FM21 Cluster: Like-Sm ribonucleoprotein, core; n=4;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 79
Score = 36.3 bits (80), Expect = 0.53
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 183 LSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSIIML 344
+ +K + GR G L D ++NL L+ES + +G +VIRGN+I+ +
Sbjct: 22 VEMKEDEGRTFQGRLVAVDEYLNLHLEESIETSGKNKGRELGTLVIRGNNILSI 75
>UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 111
Score = 35.9 bits (79), Expect = 0.70
Identities = 15/45 (33%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 213 VTGVLRGFDPFMNLVLDES-XXECKDGQRNNVGMVVIRGNSIIML 344
+ G + GFD +MNLVLD++ K R ++G ++++G++I ++
Sbjct: 30 IEGRIIGFDEYMNLVLDDAEEINVKKDTRKSLGRILLKGDNITLM 74
>UniRef50_Q7R4T3 Cluster: GLP_440_43387_42998; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_440_43387_42998 - Giardia lamblia
ATCC 50803
Length = 129
Score = 35.9 bits (79), Expect = 0.70
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNS 332
P+L ++ L++ G TG L D MN+V+ K+ R ++G+VV+RG
Sbjct: 5 PKLVNYVGSPLTVHALNGYVYTGTLLAIDRHMNMVISSCCCRVKESAR-SLGLVVLRGEE 63
Query: 333 I 335
+
Sbjct: 64 V 64
>UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_680_47464_47838 - Giardia lamblia
ATCC 50803
Length = 124
Score = 35.9 bits (79), Expect = 0.70
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Frame = +3
Query: 177 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDG------QRNNVGMVVIRGNSII 338
K + ++L +GR +TGVL+ +D +NLV E+ ++ +R N ++RG+++I
Sbjct: 62 KPVLVQLRSGRFITGVLKAYDRHLNLVFSEATETWEENGIEYTEERKN---FMLRGDNVI 118
Query: 339 MLES 350
M+ S
Sbjct: 119 MVVS 122
>UniRef50_A4VDT4 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 107
Score = 35.9 bits (79), Expect = 0.70
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNV----GMVVIRG 326
L+K + KK+ I G+ + G+L+G D +N +L + + N G+ ++RG
Sbjct: 17 LEKLLFKKIQIITTDGKVLIGILKGLDQALNSILSDCVERVFSSENNTKTIKHGLYLLRG 76
Query: 327 NSIIML 344
++I +L
Sbjct: 77 DNIAVL 82
>UniRef50_A0C1J5 Cluster: Chromosome undetermined scaffold_142,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_142,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 95
Score = 35.9 bits (79), Expect = 0.70
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 198 NAGRAVTGVLRGFDPFMNLVLDES-XXECKDGQRNNVGMVVIRGNSIIMLESL 353
N + G L GFD ++NLVLD + + K +G ++++G +I+++ +L
Sbjct: 38 NDNLRIQGKLAGFDEYLNLVLDRAVEYDRKTKATKELGKILLKGENIVLVRTL 90
>UniRef50_Q9SUM2 Cluster: Probable small nuclear ribonucleoprotein
F; n=7; Magnoliophyta|Rep: Probable small nuclear
ribonucleoprotein F - Arabidopsis thaliana (Mouse-ear
cress)
Length = 88
Score = 35.9 bits (79), Expect = 0.70
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQ-RNNVGMVVIRGN 329
P L K + +KL G G L D +MNL L + E DGQ N+G ++IR N
Sbjct: 10 PFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTE-EYIDGQLTGNLGEILIRCN 68
Query: 330 SIIMLESL 353
+++ + +
Sbjct: 69 NVLYVRGV 76
>UniRef50_Q3LW01 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 82
Score = 35.5 bits (78), Expect = 0.93
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 11/75 (14%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGF------DPFMNLVL---DESXXECKDGQ--RNNV 305
LKK+++K+++I + G + F D FMNLVL +E + KD Q R +
Sbjct: 8 LKKYINKRINIVTKNYDRINGRYKKFYRLLAYDKFMNLVLSDVEEYINDKKDSQEIRRVL 67
Query: 306 GMVVIRGNSIIMLES 350
G++V+RG+ II L S
Sbjct: 68 GLMVLRGSEIIYLFS 82
>UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 83
Score = 35.5 bits (78), Expect = 0.93
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRG 326
+L+ ++K++ I+ GR V G L FD +NLVLDE QR +G+V+ RG
Sbjct: 11 KLQSHINKEVVIQFQGGRQVKGTLLSFDNQLNLVLDEVRE--LPSQR-ILGLVICRG 64
>UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167,
whole genome shotgun sequence; n=3;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_167, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 138
Score = 35.5 bits (78), Expect = 0.93
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Frame = +3
Query: 165 KFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXEC--KDG-----QRNNVGMVVIR 323
+++D ++ I L GR + G FD +N++L E K G + +GM+++R
Sbjct: 9 QWIDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEEYRIRKQGIHEIETKRTLGMIIVR 68
Query: 324 GNSIIMLES 350
G++II L +
Sbjct: 69 GDNIISLSA 77
>UniRef50_A6R7U2 Cluster: Predicted protein; n=2;
Eurotiomycetidae|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 104
Score = 35.5 bits (78), Expect = 0.93
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 195 LNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSIIML 344
L + +G L GFD ++N+VL++ G + + +++ GN+I ML
Sbjct: 43 LTSNSEFSGTLLGFDDYVNMVLEDVTEFDYTGSQTKLSKILLNGNNICML 92
>UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Cryptosporidium parvum Iowa II|Rep: Small nuclear
ribonucleoprotein, putative - Cryptosporidium parvum
Iowa II
Length = 92
Score = 35.1 bits (77), Expect = 1.2
Identities = 17/45 (37%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Frame = +3
Query: 219 GVLRGFDPFMNLVLDESX--XECKDGQR-NNVGMVVIRGNSIIML 344
GV++GFD +MN+VLD++ K+ +R +VG +++RG +I ++
Sbjct: 44 GVIQGFDEYMNIVLDQASEVYTKKEVRRETSVGQLLLRGENISLI 88
>UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 84
Score = 35.1 bits (77), Expect = 1.2
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 135 MSKAHPPE--LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVG 308
MS+ P+ ++ M+K++ +K+ G+ + GVL +D N++L + E G N
Sbjct: 1 MSEKPMPQDYIRLSMEKRVKVKVQEGQELEGVLHAYDEHYNIILGD-VLESIMGLDKNGK 59
Query: 309 MVVIRGNSIIML 344
+ +R N I ML
Sbjct: 60 FIPVRQNQIDML 71
>UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protein -
Methanosarcina acetivorans
Length = 74
Score = 35.1 bits (77), Expect = 1.2
Identities = 16/64 (25%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAG-RAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNS 332
+++K + ++ +++ + G L+ D +MNL L ++ + + ++G VV+RGN+
Sbjct: 6 KVQKIVGSRIRVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVRGEKVRSLGSVVLRGNN 65
Query: 333 IIML 344
II++
Sbjct: 66 IILI 69
>UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1;
uncultured crenarchaeote|Rep: Putative uncharacterized
protein - uncultured crenarchaeote
Length = 89
Score = 35.1 bits (77), Expect = 1.2
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNN 302
L++ + K + +KL R+V G ++GFD MN+V+ E+ + NN
Sbjct: 11 LQESVGKIVLVKLKGRRSVKGKIKGFDKQMNIVITEATEVIEQQSNNN 58
>UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep:
Sm-like protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 88
Score = 34.7 bits (76), Expect = 1.6
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Frame = +3
Query: 138 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SXXECKDGQR-NNV 305
S+ P EL + + K+ + + + + G+L+GFD ++N+VL++ +G+R +
Sbjct: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 65
Query: 306 GMVVIRGNSIIML 344
+++ GN+I +L
Sbjct: 66 DQILLNGNNIAIL 78
>UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Rep:
AER432Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 158
Score = 34.7 bits (76), Expect = 1.6
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +3
Query: 144 AHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXE 278
+H LK +D KL + GR G L FD MNLVL + E
Sbjct: 6 SHRSTLKDLIDYKLRVLSQDGRVYVGTLLAFDAHMNLVLADCVEE 50
>UniRef50_Q24297 Cluster: Small nuclear ribonucleoprotein F; n=7;
Fungi/Metazoa group|Rep: Small nuclear ribonucleoprotein
F - Drosophila melanogaster (Fruit fly)
Length = 88
Score = 34.7 bits (76), Expect = 1.6
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNS 332
P L K + +KL G+ G L D +MN+ L + + N+G V+IR N+
Sbjct: 11 PFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNN 70
Query: 333 IIMLESL 353
++ ++ +
Sbjct: 71 VLYIKGM 77
>UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=5; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm5 - Saccharomyces cerevisiae (Baker's yeast)
Length = 93
Score = 34.7 bits (76), Expect = 1.6
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 8/70 (11%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDES---XXECKDGQRN-----NVGMV 314
+ K +++K+ I L + R G L GFD F+N++L+++ + +D RN + G +
Sbjct: 12 IDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRM 71
Query: 315 VIRGNSIIML 344
++ GN+I +L
Sbjct: 72 LLSGNNIAIL 81
>UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=2; Saccharomyces cerevisiae|Rep: U6 snRNA-associated
Sm-like protein LSm3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 89
Score = 34.7 bits (76), Expect = 1.6
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--------SXXECKDGQRNNVGMV 314
LK +D+++ IKL R + G L+ FD N+VL + + E + +R MV
Sbjct: 8 LKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESER-RCEMV 66
Query: 315 VIRGNSIIMLES 350
IRG+++ ++ +
Sbjct: 67 FIRGDTVTLIST 78
>UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1;
Filobasidiella neoformans|Rep: Sm-like protein, putative
- Cryptococcus neoformans (Filobasidiella neoformans)
Length = 95
Score = 34.3 bits (75), Expect = 2.2
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXE------CKDGQ-------RN 299
+K + +++ IKL R VTGVL +D MN+V+ ++ ++GQ R
Sbjct: 16 VKLALGERVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHVVDVTEEGQPLPPRIERR 75
Query: 300 NVGMVVIRGNSIIML 344
M+ +RG+ +I+L
Sbjct: 76 TAEMLFVRGDGVILL 90
>UniRef50_A7TII8 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 109
Score = 34.3 bits (75), Expect = 2.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE 266
P LK +++KK+ I GR + L GFD NLVL +
Sbjct: 3 PLLKDYLNKKIVIITTEGRCLLATLEGFDKNTNLVLSQ 40
>UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep:
Sm-like protein - Sulfolobus acidocaldarius
Length = 87
Score = 34.3 bits (75), Expect = 2.2
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNV---GMVVIRGN 329
LK ++K + +KL G G L D MNLVL + E ++G + V G V+IRG+
Sbjct: 12 LKTALNKIVLVKLKNGEEYVGRLEQSDGTMNLVLKDC-TEYREGTSDPVAKYGRVLIRGS 70
Query: 330 SIIML 344
+I+ +
Sbjct: 71 NILFI 75
>UniRef50_P34659 Cluster: Probable small nuclear ribonucleoprotein
F; n=13; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein F - Caenorhabditis elegans
Length = 85
Score = 34.3 bits (75), Expect = 2.2
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNS 332
P L K + KL G GVL D +MNL L + + N+G ++IR N+
Sbjct: 11 PFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNN 70
Query: 333 II 338
++
Sbjct: 71 VL 72
>UniRef50_Q5CME6 Cluster: Similar to small nuclear
ribonucleoprotein; n=2; Cryptosporidium|Rep: Similar to
small nuclear ribonucleoprotein - Cryptosporidium
hominis
Length = 139
Score = 33.9 bits (74), Expect = 2.8
Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD--ESXXECKDGQ-----RNNVGMVV 317
++K+++ ++ + + R + G L FD MNLVL + K G+ + ++G+++
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEEPKELKRSLGLIM 60
Query: 318 IRGNSII 338
+RG +I+
Sbjct: 61 LRGENIV 67
>UniRef50_A7AQW8 Cluster: Small nuclear ribonucleoprotein F,
putative; n=1; Babesia bovis|Rep: Small nuclear
ribonucleoprotein F, putative - Babesia bovis
Length = 94
Score = 33.9 bits (74), Expect = 2.8
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNV--GMVVIRG 326
P L K + + + + L G G L+ FD +MN+ L E+ E ++G G ++IR
Sbjct: 26 PFLAKLVGQNVFVTLKWGMEYKGFLKSFDSYMNIEL-ENAEEWENGVMKGTLGGTILIRC 84
Query: 327 NSIIMLES 350
N+++ + +
Sbjct: 85 NNVLHIRA 92
>UniRef50_Q8SQK1 Cluster: U6 snRNA-ASSOCIATED RIBONUCLEOPROTEIN;
n=1; Encephalitozoon cuniculi|Rep: U6 snRNA-ASSOCIATED
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 94
Score = 33.9 bits (74), Expect = 2.8
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +3
Query: 180 KLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSI 335
++S+ L AG V+G L G DP++NL L + +++ + IRG+SI
Sbjct: 14 RVSVMLKAGVYVSGRLGGIDPYLNLSLLDVRILSSHPGLSSISVCSIRGSSI 65
>UniRef50_Q3LWL6 Cluster: MRNA splicing protein; n=1; Bigelowiella
natans|Rep: MRNA splicing protein - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 80
Score = 33.5 bits (73), Expect = 3.8
Identities = 13/43 (30%), Positives = 28/43 (65%)
Frame = +3
Query: 207 RAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSI 335
+ + G + GFD +MN+VL E+ + K+ ++ +++++GN I
Sbjct: 31 KTINGKIIGFDEYMNIVLSEAVAKNKEVEKIK-NLILVKGNQI 72
>UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep:
AGR130Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 80
Score = 33.5 bits (73), Expect = 3.8
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL-DESXXECKD-GQRNNVGMVVIRGNS 332
+ + +++ + + L + R TG L GFD F+N+V+ D + D + + G +++ GN+
Sbjct: 9 IDRAINQPIWVLLTSNREFTGTLVGFDDFVNVVIEDVVEYDAPDRAVKRHPGRMLLSGNN 68
Query: 333 IIML 344
I +L
Sbjct: 69 ITVL 72
>UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-PA
- Drosophila melanogaster (Fruit fly)
Length = 95
Score = 33.1 bits (72), Expect = 5.0
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD---ESXXECKDG-QRNNVGMVVIRG 326
L+ +++ +SI GR G L+GFD +N+++D E G ++ +G+ +IRG
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSGIEQIVLGLHIIRG 63
Query: 327 NSIIML 344
++I ++
Sbjct: 64 DNIAVI 69
>UniRef50_Q8MYW8 Cluster: RE61341p; n=1; Drosophila
melanogaster|Rep: RE61341p - Drosophila melanogaster
(Fruit fly)
Length = 114
Score = 33.1 bits (72), Expect = 5.0
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = +2
Query: 128 HYNVKSTSTRIEKIHGQKIVNKAECGSRCYRCVARF*SIHE 250
H NV+ S R EKIHGQ + E +R R AR S+HE
Sbjct: 24 HQNVEGPSPRGEKIHGQAHDAETERRTRGDRYFARLRSLHE 64
>UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Piroplasmida|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Theileria parva
Length = 94
Score = 33.1 bits (72), Expect = 5.0
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLV----LDESXXECKDGQRNNVGMVVI 320
P L++F++ + + GR GVL+GFD NLV L+ + +G+ ++
Sbjct: 3 PILEQFIECSVFVISVDGRVFVGVLKGFDQLTNLVLYNCLERVYHPDAPVEELELGIYLL 62
Query: 321 RGNSIIML 344
RG++I+++
Sbjct: 63 RGDNIVLV 70
>UniRef50_A2DQD7 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 107
Score = 33.1 bits (72), Expect = 5.0
Identities = 17/68 (25%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQR---NNVGMVVIRGN 329
L++ ++ +++ G + G+L +D MNLVL + +D Q+ +G++V+RG
Sbjct: 8 LQRLLNGLVTVTTVEGLSFQGILMNYDEHMNLVLRQVEEIPQDNQQREPKRIGLMVMRGC 67
Query: 330 SIIMLESL 353
++ +E++
Sbjct: 68 NVSTVEAV 75
>UniRef50_Q8SRU9 Cluster: U6 snRNA-ASSOCIATED SMALL
RIBONUCLEOPROTEIN; n=1; Encephalitozoon cuniculi|Rep: U6
snRNA-ASSOCIATED SMALL RIBONUCLEOPROTEIN -
Encephalitozoon cuniculi
Length = 102
Score = 33.1 bits (72), Expect = 5.0
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD----ESXXECKDGQRNNVGMVVIR 323
+ +K++++++ + L GR + GV++ FD F ++ LD + + +R + + +IR
Sbjct: 11 DYEKYLEQEVVVMLRDGRYLYGVMKSFDQFNSVTLDGVIERIFHDTRYAERRH-ELFIIR 69
Query: 324 GNSIIML 344
G +I M+
Sbjct: 70 GENITMI 76
>UniRef50_Q4P8W1 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 382
Score = 33.1 bits (72), Expect = 5.0
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +3
Query: 138 SKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXE--CKDGQR--NNV 305
SKA +K F+ + + + GRA GV D N++L ++ +G+ NV
Sbjct: 10 SKAVETIIKNFVGRTSIVHIPDGRAFRGVFICVDSGKNIILADTDETRLTPEGRTTIRNV 69
Query: 306 GMVVIRGNSIIMLESLH 356
GMV+I G ++ +E H
Sbjct: 70 GMVMIPGEYVVKVEVQH 86
>UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 80
Score = 33.1 bits (72), Expect = 5.0
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE 266
+ K + ++ + +N G+ TG L GFD ++N+VL+E
Sbjct: 21 IDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLEE 56
>UniRef50_Q0ULJ4 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 234
Score = 33.1 bits (72), Expect = 5.0
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE 266
L +DKK+ + L + G+LR +D F NLVL E
Sbjct: 97 LLDMVDKKVDVLLRDEKEYIGILRSYDQFANLVLTE 132
>UniRef50_Q9LMB5 Cluster: F14D16.28; n=6; core eudicotyledons|Rep:
F14D16.28 - Arabidopsis thaliana (Mouse-ear cress)
Length = 223
Score = 32.7 bits (71), Expect = 6.6
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPF 245
L ++DKKL + L GR + G+LR FD F
Sbjct: 72 LAAYLDKKLLVLLRDGRKLMGLLRSFDQF 100
>UniRef50_Q6FJA6 Cluster: Similar to sp|P47093 Saccharomyces
cerevisiae YJR022w pre-mRNA splicing factor; n=1;
Candida glabrata|Rep: Similar to sp|P47093 Saccharomyces
cerevisiae YJR022w pre-mRNA splicing factor - Candida
glabrata (Yeast) (Torulopsis glabrata)
Length = 105
Score = 32.7 bits (71), Expect = 6.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE 266
P LK++++K + + AG + VL G+D + NLV+ E
Sbjct: 3 PLLKQYLNKDIVVVTTAGEVMHVVLDGYDKYTNLVVKE 40
>UniRef50_Q4PB34 Cluster: Putative uncharacterized protein; n=3;
Dikarya|Rep: Putative uncharacterized protein - Ustilago
maydis (Smut fungus)
Length = 136
Score = 32.7 bits (71), Expect = 6.6
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 198 NAGRAVTGVLRGFDPFMNLVL--DESXXECKDGQRNNVGMVVIRGNSII 338
N + G + GFD FMN+ L E KD +R +G ++++G++I+
Sbjct: 32 NVDFRIEGKIIGFDEFMNVTLADAEEVWTKKDNKRVELGRILLKGDNIV 80
>UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Pyrococcus furiosus
Length = 76
Score = 32.7 bits (71), Expect = 6.6
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQ-RNNVGMVVIRGNSI 335
+ K +DK + + L G G L G+D +N+VL + +DG+ G +VIRG+++
Sbjct: 9 IHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANAEL-LQDGEVVKKYGKIVIRGDNV 67
Query: 336 IML 344
+ +
Sbjct: 68 LAI 70
>UniRef50_Q9VLV1 Cluster: CG14532-PA; n=1; Drosophila
melanogaster|Rep: CG14532-PA - Drosophila melanogaster
(Fruit fly)
Length = 197
Score = 32.3 bits (70), Expect = 8.7
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +1
Query: 130 LQCQKHIHQN*KNSWTKNCQ*S*MRVALLPVCCAVL 237
LQ +H Q+ + W NCQ M LLP+CCAVL
Sbjct: 68 LQQPQH-QQDDSDLWLHNCQSKSMGRKLLPLCCAVL 102
>UniRef50_A2EQ40 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 93
Score = 32.3 bits (70), Expect = 8.7
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 141 KAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXEC-KDGQRNNVGMVV 317
K + LK+ ++ + N+ + G L GFD +MNLVL +S K+ R +G +
Sbjct: 17 KIYVSYLKERARLRVHLNDNSKMYMEGNLLGFDEYMNLVLGDSYEVYPKENTRVPLGTSL 76
Query: 318 IRGNSIIMLESL 353
+RG + M+ +
Sbjct: 77 LRGECVGMVHPI 88
>UniRef50_Q9HPS2 Cluster: SnRNP homolog; n=2; Halobacteriaceae|Rep:
SnRNP homolog - Halobacterium salinarium (Halobacterium
halobium)
Length = 69
Score = 32.3 bits (70), Expect = 8.7
Identities = 12/35 (34%), Positives = 25/35 (71%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD 263
L++ +++ ++++L G TGVL G+D MN+V++
Sbjct: 18 LEESLEETVTVRLKDGDEFTGVLTGYDQHMNVVIE 52
>UniRef50_Q976F2 Cluster: 90aa long hypothetical small nuclear
ribonucleoprotein; n=2; Thermoprotei|Rep: 90aa long
hypothetical small nuclear ribonucleoprotein -
Sulfolobus tokodaii
Length = 90
Score = 32.3 bits (70), Expect = 8.7
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 129 ITMSKAHPP--ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNN 302
I +K P LK +K + +KL G G L D MNLVL + E ++G
Sbjct: 5 IVQAKIENPLKSLKTATNKIVLVKLKDGSEYVGRLEQSDGTMNLVLRDC-IETREGTAEP 63
Query: 303 V---GMVVIRGNSIIML 344
V G V+IRG++I+ +
Sbjct: 64 VAKYGRVLIRGSNILFI 80
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 476,702,010
Number of Sequences: 1657284
Number of extensions: 8170139
Number of successful extensions: 17530
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 16995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17513
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40820699206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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