Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_E19
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 88 8e-19
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 53 4e-08
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 44 2e-05
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 41 1e-04
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc... 41 2e-04
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 41 2e-04
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 31 0.12
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 31 0.16
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 28 0.87
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 27 1.5
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 27 1.5
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.0
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 27 2.7
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 3.5
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr... 26 3.5
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 25 6.2
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 88.2 bits (209), Expect = 8e-19
Identities = 38/76 (50%), Positives = 59/76 (77%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMV 314
MSKA P+LKK++D+++ ++LN R V GVLRG+D F+N+VL++S E DG++ +G V
Sbjct: 1 MSKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSV 60
Query: 315 VIRGNSIIMLESLHRL 362
IRGNS+IM+E+L ++
Sbjct: 61 AIRGNSVIMIETLDKM 76
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 52.8 bits (121), Expect = 4e-08
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 7/70 (10%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKD-------GQRNNVGMV 314
+L ++ D+++ GR +TG+L+GFD MNLVLD+ + ++ G +G+V
Sbjct: 27 DLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLV 86
Query: 315 VIRGNSIIML 344
V+RG +++++
Sbjct: 87 VVRGTTLVLI 96
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 43.6 bits (98), Expect = 2e-05
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNV-GMVVIRGNSI 335
L K + KK+ I+L++G G+L D +MNL L E E +G++ NV G IRGN++
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLAL-ERTEEYVNGKKTNVYGDAFIRGNNV 67
Query: 336 IMLESL 353
+ + +L
Sbjct: 68 LYVSAL 73
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 41.1 bits (92), Expect = 1e-04
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXEC----KDGQRNNVGMVVIRG 326
L FM++++ + N GR V G L+GFD NL+L +S +D + +G+ ++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 327 NSIIML 344
++ M+
Sbjct: 63 ENVAMV 68
>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 140
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXEC-KDGQRNNV--GMVVIRGN 329
L ++D+K+ + L G+ + G+LR FD F NL+L + D ++ G+ ++RG
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGE 75
Query: 330 SIIMLESL 353
++++L L
Sbjct: 76 NVVLLGEL 83
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/45 (31%), Positives = 31/45 (68%)
Frame = +3
Query: 219 GVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSIIMLESL 353
G +RGFD FMN+VLD++ + +G ++++G++I +++++
Sbjct: 40 GQIRGFDEFMNIVLDDAVQVDAKNNKRELGRILLKGDNITLIQAI 84
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 31.1 bits (67), Expect = 0.12
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNV---------- 305
++ ++ L++ GR G L FD FMNLVL + E + ++ NV
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSD-CQEYRHIKKQNVPSNSVYEEKR 63
Query: 306 --GMVVIRGNSIIML 344
G+V++RG I+ L
Sbjct: 64 MLGLVILRGEFIVSL 78
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 30.7 bits (66), Expect = 0.16
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL-DESXXECKDGQRNNVGMVVIRGNSI 335
+ K + L + + + R G L GFD ++N+VL D + + G +++ GN +
Sbjct: 11 IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGM 70
Query: 336 IML 344
ML
Sbjct: 71 CML 73
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 28.3 bits (60), Expect = 0.87
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 177 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQR-NNVGMVVIRGNSI 335
+ + ++L G G L D +MNL L E DG + + IRGN+I
Sbjct: 13 RPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNI 66
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 144 AHPPELKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDES 269
A P +L + +D+ + +KL R + G L +D +N+VL ++
Sbjct: 8 AEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDA 50
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 27.5 bits (58), Expect = 1.5
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +3
Query: 162 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD 263
K +D +++++L ++ G+L+ D F+N+ L+
Sbjct: 8 KTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLE 41
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 256 TKFMNGSKPRNTPVTARPAFSFIDNFLSMNF 164
T+ GSKP NT V A S ++ ++MNF
Sbjct: 919 TQLNTGSKPVNTNVEALTTISSMNQAVNMNF 949
>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 413 EAHLQHW*YFLPTVSXLK--SV*RFQHYNTV 327
++H HW Y LPT + LK SV R +Y+ V
Sbjct: 247 DSHNSHWWYNLPTEARLKGLSVGRTTNYSVV 277
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 350 RFQHYNTVTTNYHHPNIVTL 291
R Q T+ HHPNI+TL
Sbjct: 67 RLQREVTILRQLHHPNIITL 86
>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
3|||Manual
Length = 184
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 343 WNLYTDFSXLTVGKKYHQCCKCASLFI 423
WNL TD L H C KC SLFI
Sbjct: 39 WNLETDPKTLL-----HGCSKCGSLFI 60
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 382 KKYHQCCKCASLFINK*I*NS 444
+K +QC C+ FIN+ I NS
Sbjct: 360 RKVYQCSNCSQTFINEDIQNS 380
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,077,804
Number of Sequences: 5004
Number of extensions: 37458
Number of successful extensions: 110
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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