Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_E19
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 92 3e-19
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 80 1e-15
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 47 1e-05
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 42 3e-04
02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427... 36 0.018
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140... 36 0.018
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 36 0.024
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 32 0.29
04_03_0736 - 19145428-19145474,19145608-19145721,19146707-191478... 31 0.89
07_01_0479 + 3606663-3607448 30 1.6
11_06_0609 + 25444941-25444946,25445678-25445765,25446013-254460... 28 6.3
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 28 6.3
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 91.9 bits (218), Expect = 3e-19
Identities = 42/74 (56%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Frame = +3
Query: 135 MSKA-HPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGM 311
MS++ PP+LKK+MDKKL IKLNA R + G LRGFD FMNLV+D + E + ++GM
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNT-VEVNGNDKTDIGM 59
Query: 312 VVIRGNSIIMLESL 353
VV+RGNS++M+E+L
Sbjct: 60 VVVRGNSVVMIEAL 73
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 80.2 bits (189), Expect = 1e-15
Identities = 44/88 (50%), Positives = 59/88 (67%), Gaps = 15/88 (17%)
Frame = +3
Query: 135 MSKA-HPPELKKFMDKKLS--------------IKLNAGRAVTGVLRGFDPFMNLVLDES 269
MS++ PP+LKK+MDKKL +KLNA R V G LRGFD FMNLV+D +
Sbjct: 1 MSRSGQPPDLKKYMDKKLQTLMVYSFTLFSILPVKLNANRVVIGTLRGFDQFMNLVVDNT 60
Query: 270 XXECKDGQRNNVGMVVIRGNSIIMLESL 353
E ++N++GMVVIRGNS++M+E+L
Sbjct: 61 -VEVNGNEKNDIGMVVIRGNSVVMIEAL 87
>08_01_0523 +
4556309-4556311,4556434-4556515,4557528-4557548,
4557824-4557895,4558259-4558311,4558721-4558807
Length = 105
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 15/78 (19%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGR-------AVTGVLRGFDPFMNLVLDES---XXECKD-----G 290
+L KF+DK + +KL GR +VTG L+G+D +NLVLDE+ E D G
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVSFYGQSVTGTLKGYDQLLNLVLDEAVEFEREQDDPLKLSG 69
Query: 291 QRNNVGMVVIRGNSIIML 344
+ +G++V RG +++++
Sbjct: 70 KTRQLGLIVCRGTAVMLV 87
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDES 269
P L+ +D+ +S+ N GR + G LRGFD N++LDES
Sbjct: 6 PGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDES 44
>02_01_0576 -
4270808-4270871,4271548-4271612,4271717-4271754,
4272060-4272147,4272507-4272625,4273682-4273721
Length = 137
Score = 36.3 bits (80), Expect = 0.018
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +3
Query: 129 ITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQ-RNNV 305
+T+ P L K + +KL G G L D +MNL L + E DGQ N+
Sbjct: 53 VTVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTE-EYIDGQFSGNL 111
Query: 306 GMVVIRGNSIIMLESL 353
G ++IR N+++ L +
Sbjct: 112 GEILIRCNNVLYLRGV 127
>02_01_0209 -
1399613-1399622,1399719-1399764,1399849-1399927,
1400004-1400162,1400988-1401050,1401154-1401222
Length = 141
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/40 (37%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = +3
Query: 228 RGFDPFMNLVLDES-XXECKDGQRNNVGMVVIRGNSIIML 344
+GFD +MNLVLDE+ K R ++G ++++G++I ++
Sbjct: 97 KGFDEYMNLVLDEAEEINIKKDTRKSLGRILLKGDNITLM 136
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/45 (33%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 213 VTGVLRGFDPFMNLVLDES-XXECKDGQRNNVGMVVIRGNSIIML 344
+ G + GFD +MNLVLD++ K R ++G ++++G++I ++
Sbjct: 30 IEGRIIGFDEYMNLVLDDAEEINVKKDTRKSLGRILLKGDNITLM 74
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/71 (21%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SXXECKDGQR-NNVGMVVIRGN 329
+ + + K+ + + + + G L GFD ++N+VL++ +G+R + +++ GN
Sbjct: 84 IDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGN 143
Query: 330 SIIMLESLHRL 362
+I ++ +L ++
Sbjct: 144 NIAIVRNLDQI 154
>04_03_0736 -
19145428-19145474,19145608-19145721,19146707-19147870,
19150251-19150383
Length = 485
Score = 30.7 bits (66), Expect = 0.89
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +3
Query: 219 GVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSIIMLESLHR 359
G+L D +MN+ ++++ +N G IRGN+++ + + R
Sbjct: 433 GILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 479
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE 266
MS ++ +F++ ++ + + GR + G FD MNLVL +
Sbjct: 1 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGD 44
>11_06_0609 +
25444941-25444946,25445678-25445765,25446013-25446048,
25446069-25446106,25446219-25446283,25446622-25446685
Length = 98
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 219 GVLRGFDPFMNLVLDESXXECKDGQ-RNNVGMVVIRGNSIIMLESL 353
G L D +MNL L + E DGQ N+G ++IR N+++ L +
Sbjct: 44 GYLVSVDSYMNLQLANTE-EYIDGQFSGNLGEILIRCNNVLYLRGV 88
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRN-NVGMVVIRGNSI 335
LK + ++L G G L D +MN+ L E KDG + + IRGN+I
Sbjct: 7 LKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTI 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,165,489
Number of Sequences: 37544
Number of extensions: 206245
Number of successful extensions: 383
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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