Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_E19
(585 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 125 1e-28
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 125 1e-28
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 125 1e-28
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 125 1e-28
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 125 1e-28
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 125 1e-28
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 125 1e-28
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 125 1e-28
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 125 1e-28
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 100 8e-21
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 55 2e-07
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 55 2e-07
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 55 2e-07
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 44 4e-04
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 44 4e-04
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 44 4e-04
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 44 4e-04
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 41 0.004
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 41 0.004
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 41 0.004
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 41 0.004
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 40 0.006
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 40 0.006
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 40 0.006
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 40 0.006
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 40 0.006
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 40 0.006
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 40 0.006
BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small ... 40 0.006
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 40 0.006
AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein. 40 0.006
AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein. 40 0.006
AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein. 40 0.006
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 37 0.046
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 37 0.046
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 37 0.046
X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein. 31 4.0
CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein. 31 4.0
BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear ribonucle... 31 4.0
BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear ribonucle... 31 4.0
BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein. 31 4.0
BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear ribonucle... 31 4.0
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 29 9.1
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 29 9.1
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 29 9.1
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 29 9.1
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 29 9.1
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 29 9.1
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 29 9.1
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 29 9.1
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 29 9.1
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 29 9.1
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 29 9.1
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 29 9.1
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 125 bits (302), Expect = 1e-28
Identities = 58/76 (76%), Positives = 65/76 (85%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMV 314
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 315 VIRGNSIIMLESLHRL 362
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 125 bits (302), Expect = 1e-28
Identities = 58/76 (76%), Positives = 65/76 (85%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMV 314
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 315 VIRGNSIIMLESLHRL 362
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 125 bits (302), Expect = 1e-28
Identities = 58/76 (76%), Positives = 65/76 (85%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMV 314
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 315 VIRGNSIIMLESLHRL 362
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 125 bits (302), Expect = 1e-28
Identities = 58/76 (76%), Positives = 65/76 (85%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMV 314
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 315 VIRGNSIIMLESLHRL 362
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 125 bits (302), Expect = 1e-28
Identities = 58/76 (76%), Positives = 65/76 (85%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMV 314
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 315 VIRGNSIIMLESLHRL 362
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 125 bits (302), Expect = 1e-28
Identities = 58/76 (76%), Positives = 65/76 (85%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMV 314
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 315 VIRGNSIIMLESLHRL 362
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 125 bits (302), Expect = 1e-28
Identities = 58/76 (76%), Positives = 65/76 (85%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMV 314
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 315 VIRGNSIIMLESLHRL 362
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 125 bits (302), Expect = 1e-28
Identities = 58/76 (76%), Positives = 65/76 (85%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMV 314
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 315 VIRGNSIIMLESLHRL 362
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 125 bits (302), Expect = 1e-28
Identities = 58/76 (76%), Positives = 65/76 (85%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMV 314
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 315 VIRGNSIIMLESLHRL 362
VIRGNSIIMLE+L R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 99.5 bits (237), Expect = 8e-21
Identities = 46/64 (71%), Positives = 53/64 (82%)
Frame = +3
Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSIIMLES 350
MDKKLS+KLN GR V G+LRGFDPFMNLV+DE GQ+NN+GMVVIRGNSIIMLE+
Sbjct: 1 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEA 60
Query: 351 LHRL 362
L R+
Sbjct: 61 LERV 64
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 54.8 bits (126), Expect = 2e-07
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKD--------GQRNNVGM 311
+L K++DK + +K GR +G+L+GFDP +NLVLD + +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 312 VVIRGNSIIML 344
VV RG S++++
Sbjct: 74 VVCRGTSVVLI 84
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 54.8 bits (126), Expect = 2e-07
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKD--------GQRNNVGM 311
+L K++DK + +K GR +G+L+GFDP +NLVLD + +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 312 VVIRGNSIIML 344
VV RG S++++
Sbjct: 74 VVCRGTSVVLI 84
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 54.8 bits (126), Expect = 2e-07
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKD--------GQRNNVGM 311
+L K++DK + +K GR +G+L+GFDP +NLVLD + +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 312 VVIRGNSIIML 344
VV RG S++++
Sbjct: 74 VVCRGTSVVLI 84
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 44.0 bits (99), Expect = 4e-04
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +3
Query: 129 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNV 305
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L+++ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 60
Query: 306 GMVVIRGNSIIMLESLHR 359
G IRGN+++ + + R
Sbjct: 61 GDAFIRGNNVLYISTQKR 78
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 44.0 bits (99), Expect = 4e-04
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +3
Query: 129 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNV 305
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L+++ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 60
Query: 306 GMVVIRGNSIIMLESLHR 359
G IRGN+++ + + R
Sbjct: 61 GDAFIRGNNVLYISTQKR 78
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 44.0 bits (99), Expect = 4e-04
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +3
Query: 129 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNV 305
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L+++ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 60
Query: 306 GMVVIRGNSIIMLESLHR 359
G IRGN+++ + + R
Sbjct: 61 GDAFIRGNNVLYISTQKR 78
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 44.0 bits (99), Expect = 4e-04
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +3
Query: 129 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNV 305
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L+++ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 60
Query: 306 GMVVIRGNSIIMLESLHR 359
G IRGN+++ + + R
Sbjct: 61 GDAFIRGNNVLYISTQKR 78
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 40.7 bits (91), Expect = 0.004
Identities = 17/66 (25%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDES----XXECKDGQRNNVGMVVIRG 326
L+ ++++ +++ + GR + G L+GFD +NL+LDES + ++ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 327 NSIIML 344
+++ ++
Sbjct: 65 DNVAVI 70
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 40.7 bits (91), Expect = 0.004
Identities = 17/66 (25%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDES----XXECKDGQRNNVGMVVIRG 326
L+ ++++ +++ + GR + G L+GFD +NL+LDES + ++ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 327 NSIIML 344
+++ ++
Sbjct: 65 DNVAVI 70
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 40.7 bits (91), Expect = 0.004
Identities = 17/66 (25%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDES----XXECKDGQRNNVGMVVIRG 326
L+ ++++ +++ + GR + G L+GFD +NL+LDES + ++ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 327 NSIIML 344
+++ ++
Sbjct: 65 DNVAVI 70
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 40.7 bits (91), Expect = 0.004
Identities = 17/66 (25%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDES----XXECKDGQRNNVGMVVIRG 326
L+ ++++ +++ + GR + G L+GFD +NL+LDES + ++ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 327 NSIIML 344
+++ ++
Sbjct: 65 DNVAVI 70
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 39.9 bits (89), Expect = 0.006
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 213 VTGVLRGFDPFMNLVLDES-XXECKDGQRNNVGMVVIRGNSIIMLESL 353
+ G + GFD +MNLVLD++ K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 39.9 bits (89), Expect = 0.006
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 213 VTGVLRGFDPFMNLVLDES-XXECKDGQRNNVGMVVIRGNSIIMLESL 353
+ G + GFD +MNLVLD++ K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 39.9 bits (89), Expect = 0.006
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 213 VTGVLRGFDPFMNLVLDES-XXECKDGQRNNVGMVVIRGNSIIMLESL 353
+ G + GFD +MNLVLD++ K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 39.9 bits (89), Expect = 0.006
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 213 VTGVLRGFDPFMNLVLDES-XXECKDGQRNNVGMVVIRGNSIIMLESL 353
+ G + GFD +MNLVLD++ K R +G ++++G++I +L+S+
Sbjct: 32 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 79
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 39.9 bits (89), Expect = 0.006
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 213 VTGVLRGFDPFMNLVLDES-XXECKDGQRNNVGMVVIRGNSIIMLESL 353
+ G + GFD +MNLVLD++ K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 39.9 bits (89), Expect = 0.006
Identities = 17/63 (26%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDES----XXECKDGQRNNVGMVVIRG 326
L+ ++++ +++ + GR + G L+GFD +NL+LDES + ++ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 327 NSI 335
+++
Sbjct: 65 DNV 67
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 39.9 bits (89), Expect = 0.006
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 213 VTGVLRGFDPFMNLVLDES-XXECKDGQRNNVGMVVIRGNSIIMLESL 353
+ G + GFD +MNLVLD++ K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 133
Score = 39.9 bits (89), Expect = 0.006
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +3
Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNN---VGMVVIRGNSIIM 341
+DKK + L GR + G LR D F NLVL ++ G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 342 L 344
L
Sbjct: 74 L 74
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 39.9 bits (89), Expect = 0.006
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 213 VTGVLRGFDPFMNLVLDES-XXECKDGQRNNVGMVVIRGNSIIMLESL 353
+ G + GFD +MNLVLD++ K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein.
Length = 133
Score = 39.9 bits (89), Expect = 0.006
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +3
Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNN---VGMVVIRGNSIIM 341
+DKK + L GR + G LR D F NLVL ++ G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 342 L 344
L
Sbjct: 74 L 74
>AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein.
Length = 133
Score = 39.9 bits (89), Expect = 0.006
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +3
Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNN---VGMVVIRGNSIIM 341
+DKK + L GR + G LR D F NLVL ++ G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 342 L 344
L
Sbjct: 74 L 74
>AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein.
Length = 145
Score = 39.9 bits (89), Expect = 0.006
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Frame = +3
Query: 204 GRAVTGVLRGFDPFMNLVLDESXXECKD--------GQRNNVGMVVIRGNSIIML 344
GR +G+L+GFDP +NLVLD + +D +G+VV RG S++++
Sbjct: 72 GRPRSGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLI 126
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 37.1 bits (82), Expect = 0.046
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Frame = +3
Query: 138 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SXXECKDGQR-NNV 305
S+ P EL K + ++ I + + + + G L GFD F+N+VL++ +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 306 GMVVIRGNSIIML 344
+++ GN+I ML
Sbjct: 70 DQILLNGNNITML 82
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 37.1 bits (82), Expect = 0.046
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Frame = +3
Query: 138 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SXXECKDGQR-NNV 305
S+ P EL K + ++ I + + + + G L GFD F+N+VL++ +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 306 GMVVIRGNSIIML 344
+++ GN+I ML
Sbjct: 70 DQILLNGNNITML 82
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 37.1 bits (82), Expect = 0.046
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Frame = +3
Query: 138 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SXXECKDGQR-NNV 305
S+ P EL K + ++ I + + + + G L GFD F+N+VL++ +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 306 GMVVIRGNSIIML 344
+++ GN+I ML
Sbjct: 70 DQILLNGNNITML 82
>X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein.
Length = 86
Score = 30.7 bits (66), Expect = 4.0
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNS 332
P L K + +KL G G L D +MN+ L + ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 333 IIMLESL 353
++ + +
Sbjct: 69 VLYIRGV 75
>CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein.
Length = 86
Score = 30.7 bits (66), Expect = 4.0
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNS 332
P L K + +KL G G L D +MN+ L + ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 333 IIMLESL 353
++ + +
Sbjct: 69 VLYIRGV 75
>BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 30.7 bits (66), Expect = 4.0
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNS 332
P L K + +KL G G L D +MN+ L + ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 333 IIMLESL 353
++ + +
Sbjct: 69 VLYIRGV 75
>BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 30.7 bits (66), Expect = 4.0
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNS 332
P L K + +KL G G L D +MN+ L + ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 333 IIMLESL 353
++ + +
Sbjct: 69 VLYIRGV 75
>BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein.
Length = 86
Score = 30.7 bits (66), Expect = 4.0
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNS 332
P L K + +KL G G L D +MN+ L + ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 333 IIMLESL 353
++ + +
Sbjct: 69 VLYIRGV 75
>BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 30.7 bits (66), Expect = 4.0
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNS 332
P L K + +KL G G L D +MN+ L + ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 333 IIMLESL 353
++ + +
Sbjct: 69 VLYIRGV 75
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 29.5 bits (63), Expect = 9.1
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE-------SXXECK 284
M+ ++ + +D ++ L GR G + FD MNL+L DE + + +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 DGQRNNVGMVVIRGNSIIML 344
++ +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 29.5 bits (63), Expect = 9.1
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE-------SXXECK 284
M+ ++ + +D ++ L GR G + FD MNL+L DE + + +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 DGQRNNVGMVVIRGNSIIML 344
++ +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 29.5 bits (63), Expect = 9.1
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE-------SXXECK 284
M+ ++ + +D ++ L GR G + FD MNL+L DE + + +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 DGQRNNVGMVVIRGNSIIML 344
++ +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 29.5 bits (63), Expect = 9.1
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE-------SXXECK 284
M+ ++ + +D ++ L GR G + FD MNL+L DE + + +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 DGQRNNVGMVVIRGNSIIML 344
++ +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 29.5 bits (63), Expect = 9.1
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE-------SXXECK 284
M+ ++ + +D ++ L GR G + FD MNL+L DE + + +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 DGQRNNVGMVVIRGNSIIML 344
++ +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 29.5 bits (63), Expect = 9.1
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE-------SXXECK 284
M+ ++ + +D ++ L GR G + FD MNL+L DE + + +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 DGQRNNVGMVVIRGNSIIML 344
++ +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 29.5 bits (63), Expect = 9.1
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE-------SXXECK 284
M+ ++ + +D ++ L GR G + FD MNL+L DE + + +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 DGQRNNVGMVVIRGNSIIML 344
++ +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 29.5 bits (63), Expect = 9.1
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE-------SXXECK 284
M+ ++ + +D ++ L GR G + FD MNL+L DE + + +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAE 60
Query: 285 DGQRNNVGMVVIRGNSIIML 344
++ +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 29.5 bits (63), Expect = 9.1
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE-------SXXECK 284
M+ ++ + +D ++ L GR G + FD MNL+L DE + + +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 DGQRNNVGMVVIRGNSIIML 344
++ +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 29.5 bits (63), Expect = 9.1
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE-------SXXECK 284
M+ ++ + +D ++ L GR G + FD MNL+L DE + + +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 DGQRNNVGMVVIRGNSIIML 344
++ +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 29.5 bits (63), Expect = 9.1
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE-------SXXECK 284
M+ ++ + +D ++ L GR G + FD MNL+L DE + + +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 DGQRNNVGMVVIRGNSIIML 344
++ +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 29.5 bits (63), Expect = 9.1
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE-------SXXECK 284
M+ ++ + +D ++ L GR G + FD MNL+L DE + + +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 DGQRNNVGMVVIRGNSIIML 344
++ +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,726,526
Number of Sequences: 237096
Number of extensions: 1224523
Number of successful extensions: 2447
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 2194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2447
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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