Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E19
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G ...   105   2e-23
AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear...   105   2e-23
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    54   1e-07
AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like ...    46   1e-05
AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like ...    40   0.001
Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical p...    38   0.005
Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical pr...    37   0.012
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    36   0.021
L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear ...    34   0.065
AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    34   0.065
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    31   0.80 
Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like pro...    28   5.6  
Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear r...    27   7.4  
AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical...    27   7.4  

>AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G
           protein.
          Length = 77

 Score =  105 bits (252), Expect = 2e-23
 Identities = 45/76 (59%), Positives = 60/76 (78%)
 Frame = +3

Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMV 314
           MSK HPPELKK+MDK++ +KLN  R V+G+LRGFDPFMN+V+DE+    KDG   N+GM 
Sbjct: 1   MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60

Query: 315 VIRGNSIIMLESLHRL 362
           VIRGNS++++E   R+
Sbjct: 61  VIRGNSVVIMEPKERI 76


>AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 7 protein.
          Length = 77

 Score =  105 bits (252), Expect = 2e-23
 Identities = 45/76 (59%), Positives = 60/76 (78%)
 Frame = +3

Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMV 314
           MSK HPPELKK+MDK++ +KLN  R V+G+LRGFDPFMN+V+DE+    KDG   N+GM 
Sbjct: 1   MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60

Query: 315 VIRGNSIIMLESLHRL 362
           VIRGNS++++E   R+
Sbjct: 61  VIRGNSVVIMEPKERI 76


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
 Frame = +3

Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNV--------GM 311
           +L +F+DK++ +K   GR  +GVLRGFD  +N+VLD+     +D Q  +V        G+
Sbjct: 15  DLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGL 74

Query: 312 VVIRGNSIIML 344
           +V RG +I ++
Sbjct: 75  IVARGTAITVV 85


>AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like
           protein protein 6 protein.
          Length = 77

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
 Frame = +3

Query: 135 MSKAHPPE--LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQ-RNNV 305
           MSK   P   LKK + K + +KLN+G    G+L   D +MN+ L+++  E  +GQ +N  
Sbjct: 1   MSKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQT-EEYSNGQLQNKY 59

Query: 306 GMVVIRGNSIIMLES 350
           G   IRGN+++ + +
Sbjct: 60  GDAFIRGNNVLYIST 74


>AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like
           protein protein 8 protein.
          Length = 98

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/66 (27%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
 Frame = +3

Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE----SXXECKDGQRNNVGMVVIRG 326
           L  +M++ +++    GR + G+L+GFD  +NLV+++    S  E +      +G+ +IRG
Sbjct: 5   LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRG 64

Query: 327 NSIIML 344
            ++ ++
Sbjct: 65  ENVAII 70


>Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical
           protein Y49E10.15 protein.
          Length = 90

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +3

Query: 219 GVLRGFDPFMNLVLDES-XXECKDGQRNNVGMVVIRGNSIIMLES 350
           G + GFD FMN+V DE+     K   RN +G ++++G++I ++ +
Sbjct: 41  GYIIGFDEFMNVVFDEAEEVNMKTKGRNKIGRILLKGDNITLIHA 85


>Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical
           protein F40F8.9 protein.
          Length = 125

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
 Frame = +3

Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXE-------CKDGQRNNVGMVVIRGN 329
           +DKKL + L  GR + G LR  D F NL+L++           C+ GQ    G ++IRG 
Sbjct: 18  LDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ----GFMLIRGE 73

Query: 330 SI 335
           ++
Sbjct: 74  NV 75


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 35.9 bits (79), Expect = 0.021
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +3

Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SXXECKDGQR-NNVGMVVIRGN 329
           + K +  K+ + +   + + G L GFD ++N+VL++        DG+R   +  +++ GN
Sbjct: 18  IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGN 77

Query: 330 SIIML 344
            I ML
Sbjct: 78  HITML 82


>L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 5 protein.
          Length = 85

 Score = 34.3 bits (75), Expect = 0.065
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +3

Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNS 332
           P L     K +  KL  G    GVL   D +MNL L  +        + N+G ++IR N+
Sbjct: 11  PFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNN 70

Query: 333 II 338
           ++
Sbjct: 71  VL 72


>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score = 34.3 bits (75), Expect = 0.065
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = +3

Query: 120 KKHITMSKA--HPPELKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE 266
           KK +T+S     P +L +  +D+++ +K+   R + G LR FD  +N+VL E
Sbjct: 5   KKEVTLSATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSE 56


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 232  PRNTPVTARPAFSFIDNFLSMNFFNSGGCAFDIVMCFLKYYNTELML 92
            P   PVT RPA     N  SM  ++S  C F + +C +     EL+L
Sbjct: 1709 PAGIPVTGRPALKLEMNCTSMKHYDSFDC-FRLKVCDMSVQLDELLL 1754


>Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical
           protein W08E3.1 protein.
          Length = 160

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
 Frame = +3

Query: 129 ITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE---------SXXEC 281
           +T+SK +  ++   ++ ++ I L  GR   G  + FD  MN++L E            + 
Sbjct: 1   MTISKNN--KMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKK 58

Query: 282 KDGQRNNV-GMVVIRGNSIIML 344
            DG+   + G+V++RG  I+ +
Sbjct: 59  TDGEEKRILGLVLVRGEHIVSM 80


>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical protein
            ZK1193.2 protein.
          Length = 1250

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +3

Query: 72   YTKIHDNNINSVL*YFKKHITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGF-DP 242
            YT I+ NNI SV+ Y       +   P  ++KF+    S   + G    G   GF DP
Sbjct: 1131 YTGINGNNIQSVMDYIVLQNNSAPFRPAPVRKFLMLLSSQGWDKGNVSEGKENGFSDP 1188


>U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like
           protein protein 4 protein.
          Length = 123

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQR-NNVGMVVIRGNSI 335
           LK   +  + ++L  G    G L+  D +MN+ L +     KDG +   +    +RG++I
Sbjct: 8   LKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTI 67


>Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A8.8 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDP 242
           + K + P+  K  DKK +IKL  GR    ++   DP
Sbjct: 248 LGKGYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDP 283


>U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear
           ribonucleoprotein protein.
          Length = 71

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 183 LSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSI 335
           ++++   G    G L   +  MN  L E+    +DG+ + +  V IRGN I
Sbjct: 5   VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 55


>AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical
           protein Y116A8C.42 protein.
          Length = 136

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 183 LSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSI 335
           ++++   G    G L   +  MN  L E+    +DG+ + +  V IRGN I
Sbjct: 19  VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,364,044
Number of Sequences: 27780
Number of extensions: 209762
Number of successful extensions: 442
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)