Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E19
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   2.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   6.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.9  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 379 GKKYHQCCKCASLFINK*I*NSDLK 453
           G K  +C KC+   +NK + NS LK
Sbjct: 13  GSKPFKCEKCSYSCVNKSMLNSHLK 37


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -2

Query: 50  RILSNEFNFSTIFYR 6
           +I++N+FNF+ + +R
Sbjct: 390 KIINNDFNFNDVNFR 404


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 383 RNITNAVNVLH 415
           +N+TN +NV+H
Sbjct: 30  KNLTNTLNVIH 40


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 77  CILDEFPTHRILSNEFNF 24
           C LD  PT+ ++S+  +F
Sbjct: 184 CALDLTPTYAVVSSSISF 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,529
Number of Sequences: 438
Number of extensions: 2640
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)