Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_E19
(585 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 92 3e-19
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 89 2e-18
At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putati... 56 1e-08
At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putati... 56 1e-08
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 49 3e-06
At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putati... 47 1e-05
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 45 3e-05
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 45 3e-05
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta... 41 7e-04
At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F, puta... 40 0.002
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 37 0.009
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 36 0.015
At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F, puta... 36 0.020
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati... 35 0.046
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 31 0.75
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 31 0.75
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 31 0.75
At5g55560.1 68418.m06923 protein kinase family protein contains ... 30 1.3
At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putati... 29 1.7
At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putati... 29 2.3
At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL... 28 4.0
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 27 7.0
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 27 9.2
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 91.9 bits (218), Expect = 3e-19
Identities = 45/74 (60%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Frame = +3
Query: 135 MSKA-HPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGM 311
MS++ PP+LKK+MDKKL IKLNA R VTG LRGFD FMNLV+D + E + ++GM
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNT-VEVNGNDKTDIGM 59
Query: 312 VVIRGNSIIMLESL 353
VVIRGNSI+ +E+L
Sbjct: 60 VVIRGNSIVTVEAL 73
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 89.4 bits (212), Expect = 2e-18
Identities = 44/74 (59%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Frame = +3
Query: 135 MSKA-HPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGM 311
MS++ PP+LKK+MDKKL IKLNA R V G LRGFD FMNLV+D + E + ++GM
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNT-VEVNGDDKTDIGM 59
Query: 312 VVIRGNSIIMLESL 353
VVIRGNSI+ +E+L
Sbjct: 60 VVIRGNSIVTVEAL 73
>At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 56.4 bits (130), Expect = 1e-08
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKD--------GQRNNVGM 311
+L KF+DK + +KL GR VTG L+G+D +NLVLDE+ +D Q +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69
Query: 312 VVIRGNSIIML 344
+V RG +++++
Sbjct: 70 IVCRGTAVMLV 80
>At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 56.4 bits (130), Expect = 1e-08
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Frame = +3
Query: 156 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKD--------GQRNNVGM 311
+L KF+DK + +KL GR VTG L+G+D +NLVLDE+ +D Q +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69
Query: 312 VVIRGNSIIML 344
+V RG +++++
Sbjct: 70 IVCRGTAVMLV 80
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDES---XXECKDG-QRNNVGMVVIRG 326
L+ +D+ +S+ N GR + GVL+GFD N++LDES K+G Q++ +G+ +IRG
Sbjct: 7 LETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRG 66
Query: 327 NSIIMLESL 353
++I ++ L
Sbjct: 67 DNIGVIGEL 75
>At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116
Length = 128
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRN---NVGMVVIRGN 329
L ++DKKL + L GR + G+LR FD F N VL+E+ G +G+ +IRG
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIPLGLYIIRGE 74
Query: 330 SIIMLESL 353
+++++ L
Sbjct: 75 NVVLIGEL 82
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 45.2 bits (102), Expect = 3e-05
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRN---NVGMVVIRGN 329
L ++D+KL + L GR + G LR FD F N VL+ + G++ +G+ VIRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74
Query: 330 SIIMLESL 353
+++++ L
Sbjct: 75 NVVLIGEL 82
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 45.2 bits (102), Expect = 3e-05
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRN---NVGMVVIRGN 329
L ++D+KL + L GR + G LR FD F N VL+ + G++ +G+ VIRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74
Query: 330 SIIMLESL 353
+++++ L
Sbjct: 75 NVVLIGEL 82
>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 40.7 bits (91), Expect = 7e-04
Identities = 17/64 (26%), Positives = 34/64 (53%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSII 338
LK K + +KLN+G G+L D +MN+ ++++ +N G +RGN+++
Sbjct: 19 LKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVL 78
Query: 339 MLES 350
+ +
Sbjct: 79 YIST 82
>At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/66 (25%), Positives = 35/66 (53%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMVVIRGNSII 338
LK + + +KLN+G G L D +MN+ ++++ +N G IRGN+++
Sbjct: 19 LKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
Query: 339 MLESLH 356
+ +++
Sbjct: 79 YISTVN 84
>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 37.1 bits (82), Expect = 0.009
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +3
Query: 213 VTGVLRGFDPFMNLVLDES-XXECKDGQRNNVGMVVIRGNSIIML 344
+ G + GFD +MNLVLDE+ K R +G ++++G++I ++
Sbjct: 39 IEGRITGFDEYMNLVLDEAEEVSIKKNTRKPLGRILLKGDNITLM 83
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 36.3 bits (80), Expect = 0.015
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +3
Query: 213 VTGVLRGFDPFMNLVLDES-XXECKDGQRNNVGMVVIRGNSIIML 344
+ G + GFD +MNLVLDE+ K R +G ++++G++I ++
Sbjct: 39 IEGRITGFDEYMNLVLDEAEEVSIKKKTRKPLGRILLKGDNITLM 83
>At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F,
putative / snRNP-F, putative / Sm protein F, putative
similar to SWISS-PROT:Q15356 small nuclear
ribonucleoprotein F (snRNP-F, Sm protein F, Sm-F, SmF)
[Mouse]
Length = 88
Score = 35.9 bits (79), Expect = 0.020
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 153 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQ-RNNVGMVVIRGN 329
P L K + +KL G G L D +MNL L + E DGQ N+G ++IR N
Sbjct: 10 PFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTE-EYIDGQLTGNLGEILIRCN 68
Query: 330 SIIMLESL 353
+++ + +
Sbjct: 69 NVLYVRGV 76
>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm5 [Homo sapiens]
SWISS-PROT:Q9Y4Y9
Length = 88
Score = 34.7 bits (76), Expect = 0.046
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Frame = +3
Query: 138 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SXXECKDGQR-NNV 305
S+ P EL + + K+ + + + + G+L+GFD ++N+VL++ +G+R +
Sbjct: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 65
Query: 306 GMVVIRGNSIIML 344
+++ GN+I +L
Sbjct: 66 DQILLNGNNIAIL 78
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 30.7 bits (66), Expect = 0.75
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE-----SXXECKDGQRN 299
MS + ++ +F++ ++ + + GR + G FD MNLVL + K ++
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 300 N--------VGMVVIRGNSIIML 344
N +G+V++RG +I +
Sbjct: 61 NEEREERRTLGLVLLRGEEVISM 83
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 30.7 bits (66), Expect = 0.75
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE 266
MS + ++ +F++ ++ + + GR + G FD MNLVL +
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGD 44
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 30.7 bits (66), Expect = 0.75
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE 266
MS + ++ +F++ ++ + + GR + G FD MNLVL +
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGD 44
>At5g55560.1 68418.m06923 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 314
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/62 (25%), Positives = 34/62 (54%)
Frame = +3
Query: 135 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRNNVGMV 314
++K + PE K F++K ++ + A + +L DPF + +LD+ + ++ N G +
Sbjct: 255 LNKVNDPEAKAFIEKCIA-QPRARPSAAELL--CDPFFDGILDDDDEDGENNDNNGAGRI 311
Query: 315 VI 320
V+
Sbjct: 312 VV 313
>At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 98
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE 266
+D+++ +KL + R + G L FD +N++L +
Sbjct: 20 LDERIYVKLRSDRELRGKLHAFDQHLNMILGD 51
>At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein
LSm4 [Mus musculus]
Length = 129
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 159 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXXECKDGQRN-NVGMVVIRGNSI 335
LK + ++L G G L D +MN+ L E KDG R + IRGN+I
Sbjct: 7 LKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTI 66
>At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL3)
identical to IAA-amino acid hydrolase homolog ILL3
[Arabidopsis thaliana] gi|3420801|gb|AAC31939
Length = 428
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -3
Query: 217 VTARPAFSFIDNFLSMNFFNSGGCAFDIVMCFLKYYNT 104
+ +R + + LS+ F SGG FD++ ++++ T
Sbjct: 245 IISREVDPLLSHVLSVTFMKSGGSEFDVIPAYVEFGGT 282
>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 97
Score = 27.5 bits (58), Expect = 7.0
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +3
Query: 171 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE 266
+++++ +KL + R + G L FD +N++L +
Sbjct: 20 IEERIYVKLRSDRELRGKLHAFDQHLNMILGD 51
>At5g15920.1 68418.m01862 structural maintenance of chromosomes
(SMC) family protein (MSS2) similar to SMC-related
protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1053
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 16 IVEKLNSFDKIRWVGNSSNIQKSTTITLIPYYNILKSTL 132
I K+++ +K W+ N S + K + +I +NI + L
Sbjct: 108 IFRKIDTRNKSEWMFNGSTVSKKDIVEIIQKFNIQVNNL 146
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,340,325
Number of Sequences: 28952
Number of extensions: 181817
Number of successful extensions: 386
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -