Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E17
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   7.2  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   7.2  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   9.5  

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 312  TSRQKEKVDLVYAKICEQXNTNNHS*EY 395
            T+  K  ++ V  +ICE+ + N HS +Y
Sbjct: 1168 TNSYKIALNTVLVRICEEASRNEHSDQY 1195


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 20  QKVTSTMDEHTSTDTVQESSNPTL 91
           QK+TS +  H + +  Q S+NP+L
Sbjct: 390 QKITSVVSTHINANLQQFSTNPSL 413


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 17  KQKVTSTMDEHTSTDTVQESSNPTLHVEAPTDCDFNLTPATNTTA 151
           K    S     T+TDT+ ES     +V+   + DFN+   TN  A
Sbjct: 406 KANARSVSFTQTTTDTLSESEKFASNVDLDENFDFNVN-VTNEDA 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,699
Number of Sequences: 5004
Number of extensions: 42340
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)