Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E17
         (651 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB030577-1|BAA89278.1| 1463|Drosophila melanogaster CNG channel-...    29   7.2  

>AB030577-1|BAA89278.1| 1463|Drosophila melanogaster CNG channel-like
            protein.
          Length = 1463

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 29   TSTMDEHTSTDTVQESSNPTLHVEAPTDCDFNLTPATNTTA 151
            TST    +       SSN  LH ++ TD + NL    NTT+
Sbjct: 1399 TSTSTSASYVVECSASSNQILHAQSTTDLNLNLQLRQNTTS 1439


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,232,476
Number of Sequences: 53049
Number of extensions: 419822
Number of successful extensions: 831
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)