Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E16
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)               124   8e-29
SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)          44   1e-04
SB_56676| Best HMM Match : Peptidase_C1 (HMM E-Value=0.0027)           38   0.009
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.012
SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.15 
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)                32   0.35 
SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_10126| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_15810| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  

>SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
          Length = 298

 Score =  124 bits (298), Expect = 8e-29
 Identities = 58/142 (40%), Positives = 82/142 (57%)
 Frame = +3

Query: 225 HPLSDEFINTINLKQNSWKAGRNFPRDTSFAHLKKIMGVIEDEHFATLPIKTHKIDLIAS 404
           +PLS E I+ IN    +WKAG+NF    +   +K++ G  +      LP++   +  +  
Sbjct: 28  NPLSMEAIDFINSLHTTWKAGKNFAEVYTIEDVKRLCGAKKGP---PLPLRKKLLISMDD 84

Query: 405 LPENFDPRDKWPDCPTLNEVRDQGSCGSCWAFGAVEAMTDRVCTYSNGTKHFHFSAEDXX 584
           +P++FD R++WP CPT+ EVRDQG+CGSCWAFGAVEAM+DR C +S G    H SAED  
Sbjct: 85  VPDHFDSREQWPHCPTIKEVRDQGACGSCWAFGAVEAMSDRYCIHSEGKVMPHISAEDLL 144

Query: 585 XXXXXXXXXXXXXXXXXAWEYW 650
                            AW++W
Sbjct: 145 SCCETCGMGCNGGYPESAWDHW 166


>SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)
          Length = 385

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
 Frame = +3

Query: 243 FINTINLKQNSWKAGRNFPRDTSFAHLKKIMGVIEDEHFATLPIKTHKIDLIASLPENFD 422
           +I ++N +   +K   N   D +    K   G ++DE    +      ID   +     D
Sbjct: 74  YIRSMNRRSLPYKLELNHFPDLTDDEFKSYKGALDDESKDVMNDHDDVIDDDVNDETQED 133

Query: 423 PRDKWPDCPTLNEVRDQGSCGSCWAF---GAVEA---MTDRVCTYSNGT 551
             D+ P    +N  + QG+CGSCWAF   GAVEA   + +  C  SN T
Sbjct: 134 EEDE-PSDGAVNPAKGQGTCGSCWAFATAGAVEAAHFIQEGFCKTSNLT 181


>SB_56676| Best HMM Match : Peptidase_C1 (HMM E-Value=0.0027)
          Length = 295

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +3

Query: 375 KTHKIDLIASLPENFDPRDKWPD--CPTLNEVRDQGSCGSCWAFGAVEAMTDRVCTYSNG 548
           + H+   +A LP +FD RD        T         CGSCWA G   AM DR+     G
Sbjct: 41  RPHEYLNMAKLPTSFDWRDVNGTNYASTTRNQHIPQYCGSCWAHGTTSAMADRINILRKG 100

Query: 549 TKH 557
             H
Sbjct: 101 KWH 103


>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
 Frame = +3

Query: 225 HPLSDEFINTINLKQNSWKAGRNFPRDTSFAHLKKIMGVIEDEH--FATLPIKTHKIDLI 398
           +P + E     ++ +++     N   D + A + ++ G++ +E       P      D  
Sbjct: 437 YPSAHEHEKRKDIYRHNMSLKPNHMADMTDAEVNRMKGLLHEEPPLIGDSPFSIPDKDRG 496

Query: 399 ASLPENFDPRDKWPDCPTLNEVRDQGSCGSCWAFGAVEAM 518
             LP + D    W     +N V+ QG CGSC+AF    A+
Sbjct: 497 VPLPPHVD----WRKAGAVNSVKSQGICGSCYAFAVAGAL 532


>SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 435 WPDCPTLNEVRDQGSCGSCWAFGAVEAM 518
           W     +  V++QG CGSCWAF    A+
Sbjct: 121 WRSKGYVTPVKNQGQCGSCWAFSTTGAL 148


>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +3

Query: 243 FINTINLKQNSWKAGRNFPRDTSFAHLKKIMGVIEDEHF-ATLPIKTHKIDLIASLPENF 419
           FI++ N +   +    N   D S   L+ + G    + +   LP K      I  +P+  
Sbjct: 586 FIHSKNRRHAGYYLAMNHLGDRSDKELRVLRGRRYTKGYNGGLPYKPDMAS-INDVPDEM 644

Query: 420 DPRDKWPDCPTLNEVRDQGSCGSCWAFG 503
           +    W     +  V+DQ  CGSCW+FG
Sbjct: 645 N----WVIRGAVTPVKDQAVCGSCWSFG 668


>SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
          Length = 1220

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +3

Query: 435 WPDCPTLNEVRDQGSCGSCWAF---GAVE 512
           W     +  V++QG CGSCWAF   G+VE
Sbjct: 49  WSQKGYVTGVKNQGQCGSCWAFSTTGSVE 77


>SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 462 VRDQGSCGSCWAFGAVEAM 518
           V++QG CGSCWAF    ++
Sbjct: 348 VKNQGQCGSCWAFSTTGSL 366


>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 453 LNEVRDQGSCGSCWAFGAVEAM 518
           ++ VR QG CGSC+A  AV A+
Sbjct: 324 VSPVRGQGICGSCYALAAVGAV 345


>SB_10126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -3

Query: 433 LSLGSKFSGRLAIKSIL*VFIGRVAKCSSSITPIIFLRCANDVSRGKLRPAFQLFCFRLI 254
           +SL + F G   I  ++      +AK S+   PII+          K R AFQ F F+ +
Sbjct: 246 VSLYASFGGVTTIPKLMSTLPAMLAKTSACYNPIIYF-----FMYSKFRKAFQRFFFKNV 300

Query: 253 VLMNSSE 233
           +  + +E
Sbjct: 301 ITPSQTE 307


>SB_15810| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = -3

Query: 511 STAPKAQQLPQDP*SLTSFNVGQSGHLSLGSKFSGRLAIKSIL*VFIGRVAKCSSSITPI 332
           +T    + +P+   SLT++    SG+L  GS      ++   L      + K S ++ PI
Sbjct: 110 ATVQCLRNVPELHDSLTNY----SGNLGFGSDIGSPESVTVALRDLFKTMDKTSEAVPPI 165

Query: 331 IFLRCAND 308
           IFL+ AN+
Sbjct: 166 IFLQDANE 173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,742,611
Number of Sequences: 59808
Number of extensions: 417460
Number of successful extensions: 969
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)