Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E12
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   2.3  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.4  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   7.1  

>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 215 LLSREYYRPWRHLAAAARDLGSSIKSDKDKFQV 313
           LL+  Y + W+ L++  + +  S  SDKD  Q+
Sbjct: 358 LLNGRYKKRWQQLSSEVKKISDSASSDKDVKQL 390


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 354 LKRRTATSWLKANTXRRKISMVTYRVNSLVATLCR 458
           LKR    S+  ANT  RK ++V       +AT C+
Sbjct: 126 LKRPAKVSFALANTPSRKGNLVPQSPRRTIATTCK 160


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +3

Query: 99  SLIPWLFDYEIERPRSPHGSTFRLGADSGRFSQCCSRPP 215
           SLI WL    ++ P +    T  L     RF   C   P
Sbjct: 132 SLIEWLNPMNLKEPSNQESDTLSLTEKFSRFMSLCETYP 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,528
Number of Sequences: 5004
Number of extensions: 51836
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)