Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E11
         (652 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5Y3 Cluster: Ribosomal protein L41; n=1; Bombyx mori...   223   2e-57
UniRef50_Q7JZM8 Cluster: 39S ribosomal protein L41, mitochondria...   104   2e-21
UniRef50_UPI00005842FC Cluster: PREDICTED: hypothetical protein;...    48   1e-04
UniRef50_Q8IXM3 Cluster: 39S ribosomal protein L41, mitochondria...    38   0.21 
UniRef50_Q502B0 Cluster: 39S ribosomal protein L41, mitochondria...    38   0.28 
UniRef50_Q6U7Y3 Cluster: Putative uncharacterized protein hyp14;...    33   5.9  

>UniRef50_Q2F5Y3 Cluster: Ribosomal protein L41; n=1; Bombyx
           mori|Rep: Ribosomal protein L41 - Bombyx mori (Silk
           moth)
          Length = 162

 Score =  223 bits (546), Expect = 2e-57
 Identities = 112/154 (72%), Positives = 116/154 (75%)
 Frame = +1

Query: 67  LLINNFCKRNISVTATXEGKRNFXKFVIPNKRGSVLHKKKQMTEDREFEIDKRXVXXIGY 246
           +L+NNFCK NISVTAT EGK NF KFV+PNK GSVLHKKKQMTED EFEIDKR V  IGY
Sbjct: 6   ILMNNFCKSNISVTATSEGKSNFSKFVMPNKSGSVLHKKKQMTEDSEFEIDKRGVSDIGY 65

Query: 247 NLNGRFXXXXXXXXXXXXXNLKDFDLKPYVSYKAADVIQSEFTPSQLFDAVYSKKIVTDF 426
           NLNGR              NLKDFDLKPYVSYKAADVIQSEFTPSQLFDAVYSKKIVTDF
Sbjct: 66  NLNGRLVMVPEMIPEIIVPNLKDFDLKPYVSYKAADVIQSEFTPSQLFDAVYSKKIVTDF 125

Query: 427 KQXKLXXEGNPIXXXXXXXXXXXXAIIRAKQTGS 528
           KQ KL  EGNP+            AIIRAKQTGS
Sbjct: 126 KQGKLDEEGNPMEPSEEESLKPEEAIIRAKQTGS 159


>UniRef50_Q7JZM8 Cluster: 39S ribosomal protein L41, mitochondrial
           precursor; n=7; Endopterygota|Rep: 39S ribosomal protein
           L41, mitochondrial precursor - Drosophila melanogaster
           (Fruit fly)
          Length = 166

 Score =  104 bits (249), Expect = 2e-21
 Identities = 62/150 (41%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
 Frame = +1

Query: 88  KRNISVTATXEGKRNFXKFVIPNKRGSVLHKKKQMT-EDREFEIDKRXVXXIGYNLNGRF 264
           +R IS ++  EGKRNF KF   NKRG+ + K+ Q T  +    I KR V   G  ++G++
Sbjct: 16  QRTISTSSVLEGKRNFRKFNAYNKRGTRVVKEAQKTLANPPVAIHKRGVRDTGILVDGQY 75

Query: 265 XXXXXXXXXXXXXNLKDFDLKPYVSYKAADVIQSEFTPSQLFDAVYSKKIVTDFKQXKLX 444
                        +L    LKPYVSYKA DV+QSEFT   LF+AVYS+KI+ DFK  KL 
Sbjct: 76  VEIPEKIPDIIVPDLTGCKLKPYVSYKAPDVVQSEFTSLDLFNAVYSQKIIEDFKAGKLQ 135

Query: 445 XEGNPIXXXXXXXXXXXXAIIRAKQTGSHI 534
            +G+              A+ RA++TGS I
Sbjct: 136 KDGSAKEPSVNEQLTPEEALQRARKTGSDI 165


>UniRef50_UPI00005842FC Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 128

 Score = 48.4 bits (110), Expect = 1e-04
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = +1

Query: 160 RGSVLHKKKQMTE-DREFEIDKRXVXXIGYNLNGRFXXXXXXXXXXXXXNLKDFDLKPYV 336
           RG+  HK+      ++ F  +   +   GY +   +             NL+DF LK YV
Sbjct: 13  RGANRHKEMTSKRGNKNFHPNTSRIQPTGYGVRTTWKNVKEMIPEIVVPNLEDFPLKAYV 72

Query: 337 SYKAADVIQSEFTPSQLFDAVYSKKIVTDFKQXK 438
           SYK  D  Q   TP  +FD   + +++ D K  K
Sbjct: 73  SYKCPDTQQDPLTPRDIFDKCLAPQVLEDLKSGK 106


>UniRef50_Q8IXM3 Cluster: 39S ribosomal protein L41, mitochondrial
           precursor; n=12; Tetrapoda|Rep: 39S ribosomal protein
           L41, mitochondrial precursor - Homo sapiens (Human)
          Length = 137

 Score = 37.9 bits (84), Expect = 0.21
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 223 RXVXXIGYNLNG-RFXXXXXXXXXXXXXNLKDFDLKPYVSYKAADVIQSEFTPSQLFDAV 399
           R    IG+  +G RF             +L  F LKPYVSY A +  ++  T +QLF   
Sbjct: 36  RGAKGIGFLTSGWRFVQIKEMVPEFVVPDLTGFKLKPYVSYLAPESEETPLTAAQLFSEA 95

Query: 400 YSKKIVTDFK 429
            +  I  DFK
Sbjct: 96  VAPAIEKDFK 105


>UniRef50_Q502B0 Cluster: 39S ribosomal protein L41, mitochondrial
           precursor; n=9; Euteleostomi|Rep: 39S ribosomal protein
           L41, mitochondrial precursor - Danio rerio (Zebrafish)
           (Brachydanio rerio)
          Length = 135

 Score = 37.5 bits (83), Expect = 0.28
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +1

Query: 304 NLKDFDLKPYVSYKAADVIQSEFTPSQLFDAVYSKKIVTDFKQ 432
           NL+ F+LK YVSYK     +   TP +LF+ V + +I  D ++
Sbjct: 62  NLEGFNLKAYVSYKTPAGTEEPMTPEKLFNEVVAPQIQRDIEE 104


>UniRef50_Q6U7Y3 Cluster: Putative uncharacterized protein hyp14;
           n=1; Moniliophthora perniciosa|Rep: Putative
           uncharacterized protein hyp14 - Crinipellis perniciosa
           (Witches'-broom disease fungus) (Marasmiusperniciosus)
          Length = 200

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = -1

Query: 178 CEVQNLSCLVSQIX*NSFYLL*SLLQKCFFYRNYLLKVGILDIF 47
           C +Q LS L   +  +SFY+L  L  +    RN+LLKV I+ +F
Sbjct: 103 CLIQKLSSLEMYLIISSFYILFCLYTEENTIRNFLLKVKIIPLF 146


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 460,497,173
Number of Sequences: 1657284
Number of extensions: 7370115
Number of successful extensions: 12863
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12859
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)